Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq1395 114 2e-20 seq1883 95.1 2e-14 >seq1395 Length=2354079 Score = 114 bits (126), Expect = 2e-20 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 156272 AGCCATTAATGTTTTACCGCACCCAGGAGGTCCGTATAACAATACTCCTTTTATATGTTT 156331 ||||||||||||||| || || || || || || | || | |||||| | |||||| Sbjct 217904 AGCCATTAATGTTTTTCCTGTTCCTGGTGGACCATAAAGTAAAATTCCTTTCACATGTTT 217963 Query 156332 ACAACCTAATTTTTCAGTTATTTCTACCGGAACTGATCTGGAAGCAAATGCTCTTCGAAA 156391 ||||||||||| | | || ||| ||||| || || ||||| ||||||||||| Sbjct 217964 ACAACCTAATTGTGTAACAATCTCTGGCGGAAAAACTCGTGATGCAAAGGCTCTTCGAAA 218023 Query 156392 AATGAGAGAAAATTCTTTATCCAATCCCCCCACACCCATTTCCTCAAAATTCCAATTT-- 156449 ||| || |||||||||||||| ||| || | ||||||| | ||||| ||||| | Sbjct 218024 AATAGCAGTAAATTCTTTATCCAGTCCACCAATTCCCATTTTTTGAAAATCCCAATCTGG 218083 Query 156450 ATAGATATTTGA 156461 || |||| |||| Sbjct 218084 ATTGATAATTGA 218095 >seq1883 Length=454209 Score = 95.1 bits (104), Expect = 2e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 50619 ATTTTAATGACCGCCTGGAATCCAACCGATATAGATCAAACCGTTTTACCTCCGTGTCAT 50678 ||| ||||||| || |||||||||| ||||| ||| | ||||||||| |||||| Sbjct 61447 ATTATAATGACAGCATGGAATCCAATTGATATTCCAAAAATGGCTTTACCTCCTTGTCAT 61506 Query 50679 -GTTTTATGTCAATTTTATGCCACAGACAATGTTTTATCCTGTCAATGTTATCAAAGATC 50737 ||||| | ||||||||||| | | | | ||||| || ||| |||||||||| Sbjct 61507 TGTTTTGT-TCAATTTTATGTAAGCAATGAAGAATTATCATGCCAACTTTATCAAAGAAG 61565 Query 50738 AGCTGATATGGGTTTAGGCGTTCCTTTCAACGTAGCTTCTTACGCTTTATTAACGTATTT 50797 || ||||||||| | || || || || || | || ||||| ||||||||| ||| | Sbjct 61566 TGCGGATATGGGTCTTGGTGTACCATTTAATATTGCATCTTATTCTTTATTAATTTATAT 61625 Query 50798 GATCGCTCA 50806 | | || || Sbjct 61626 GCTGGCACA 61634 Score = 93.3 bits (102), Expect = 6e-14 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 50300 ATTCCCTCTATTTACGACTaaaaaaaTGTTTTGGCGCGGAATAGCGGAAGAACTTTTATG 50359 ||| || |||| || || ||| | |||||| || ||| ||||||| | ||||| Sbjct 61046 ATTTCCATTATTAACTACAAAACGCGTATTTTGGAAAGGTGTAGTGGAAGAATTATTATG 61105 Query 50360 GTTCCTCGACGGATCTACAAATTCTTTAAAGTTATCGGAGAAGTCCGTTCGTATATGGGA 50419 |||| | | ||||| |||||| || ||| ||| || ||| |||| ||| ||||| Sbjct 61106 GTTCATTAATGGATCCACAAATGCTAAAAAATTAAGCGAAAAGGATGTTCATATTTGGGA 61165 Query 50420 CGCTCACGGTTCCAGATCAAAT-TTAGATCGTTTAGGATTTAATTACAGAAACAAAGGAG 50478 || | |||| | | | | |||||| || || |||| | || | |||||| Sbjct 61166 TGCGAATAGTTCACG-TGAGTTCTTAGATTCTTGTGGTTTTACAGATAGGGAAGAAGGAG 61224 Query 50479 ATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGC 50521 ||||||| ||| |||| || |||||||||||||||||||| || Sbjct 61225 ATTTAGGTCCTATTTATGGATTTCAATGGAGACATTTTGGTGC 61267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667008942755760