Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1955 178 3e-39 seq7885 158 3e-33 seq3153 149 2e-30 seq2112 147 5e-30 seq182 116 9e-21 seq878 104 6e-17 seq4594 87.8 4e-12 >seq1955 Length=5322578 Score = 178 bits (196), Expect = 3e-39 Identities = 169/215 (79%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||||||||| || ||||| || || | || || ||| || ||| Sbjct 1861478 CAAATCTTTGTCAAAACTCTCACTGGCAAAACCATTACTTTAGAAGTTGAAGCTTCGGAC 1861419 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| |||||||| || ||||||||||| ||||| || |||||| Sbjct 1861418 ACAATAGAAAATGTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCAGATCAGCAA 1861359 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| || || |||||||| ||||||||||| ||||| | |||||||| || Sbjct 1861358 CGATTGATCTTTGCTGGTAAACAGCTAGAAGATGGAAGAACTCT--CAGATTATAATATC 1861301 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||||||||| ||||| ||| | || |||||||| Sbjct 1861300 CAAAAAGAATCTACACTCCATTTAGTGTTGAGACT 1861266 Score = 176 bits (194), Expect = 1e-38 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||||| || |||||||| ||||| || || || ||| |||||| Sbjct 1861706 CAAATCTTTGTCAAAACTCTTACTGGAAAAACTATCACACTTGAAGTTGAAGCTTCAGAC 1861647 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || |||||||| |||||||||||||| || || ||||||||| Sbjct 1861646 ACAATAGAAAATGTAAAGGCTAAGATTCAAGACAAAGAAGGAATTCCCCCTGACCAGCAA 1861587 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| | ||||||||||| ||||| | |||||||| || Sbjct 1861586 CGTTTGATCTTTGCTGGTAAACAATTAGAAGATGGAAGAACTCTCTCAGATTATAATATC 1861527 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| ||||| ||||| ||| | || |||||||| Sbjct 1861526 CAAAAGGAATCTACACTCCATTTAGTATTGAGACT 1861492 Score = 172 bits (190), Expect = 1e-37 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||||||||| |||||||| ||||| || || || ||| |||||| Sbjct 1861252 CAAATCTTTGTCAAAACTCTCACTGGAAAAACTATCACTCTTGAAGTTGAAGCTTCAGAC 1861193 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| |||||||| || ||||||||||| || || || |||||| Sbjct 1861192 ACAATAGAAAATGTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCACCTGATCAGCAA 1861133 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || |||||||| ||||||||||| |||||| | ||||| || | Sbjct 1861132 CGTTTGATTTTTGCTGGCAAACAGCTTGAAGATGGAAGAACTCTTTCAGATTACAATATT 1861073 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 |||||||| || || || ||||| || ||| |||| Sbjct 1861072 CAAAAAGAGTCTACTCTTCATCTGGTATTGCGACT 1861038 Score = 163 bits (180), Expect = 7e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || |||||||| || ||||| || || || || || || ||| || || Sbjct 1860797 CAGATCTTTGTTAAAACTCTTACTGGAAAGACTATTACACTTGAAGTTGAAGCTTCGGAT 1860738 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| |||||||| || ||||||||||| ||||| || |||||| Sbjct 1860737 ACAATAGAGAATGTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCAGCAA 1860678 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || || || || ||||| || ||||||||||| || ||| ||||| || || Sbjct 1860677 CGATTGATTTTTGCTGGCAAACAACTTGAAGATGGAAGAACACTTTTAGATTACAATATC 1860618 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||||||||| ||||||||| | || |||||||| Sbjct 1860617 CAAAAAGAATCTACACTGCATTTGGTATTGAGACT 1860583 Score = 141 bits (156), Expect = 2e-28 Identities = 166/224 (74%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || || || ||| | ||||||||||| |||||| | || || ||| Sbjct 1861940 AAAATGC---AGATCTTTGTTAAGACTTTAACAGGAAAAACCATCACCTTAGAAGTTGAA 1861884 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 |||||||| || ||||| || || |||||||| || ||||||||||| || || Sbjct 1861883 GCTTCAGACACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCA 1861824 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || ||||| | || || || || ||||| || |||||||| || || || | ||| Sbjct 1861823 GATCAACAACGTTTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGAT 1861764 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| | || ||||| || || || ||||| || |||||||| Sbjct 1861763 TATAATATTCAGAAAGAGTCTACTCTTCATCTAGTATTGAGACT 1861720 Score = 141 bits (156), Expect = 2e-28 Identities = 166/224 (74%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || || || ||| | ||||||||||| |||||| | || || ||| Sbjct 1864580 AAAATGC---AGATCTTTGTTAAGACTTTAACAGGAAAAACCATCACCTTAGAAGTTGAA 1864524 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 |||||||| || ||||| || || |||||||| || ||||||||||| || || Sbjct 1864523 GCTTCAGACACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCA 1864464 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || ||||| | || || || || ||||| || |||||||| || || || | ||| Sbjct 1864463 GATCAACAACGTTTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGAT 1864404 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| | || ||||| || || || ||||| || |||||||| Sbjct 1864403 TATAATATTCAGAAAGAGTCTACTCTTCATCTAGTATTGAGACT 1864360 Score = 132 bits (146), Expect = 1e-25 Identities = 159/215 (74%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || |||||||| || ||||| || || || || || || ||| || || Sbjct 1861024 CAGATCTTTGTTAAAACTCTTACTGGAAAGACTATTACACTTGAAGTTGAAGCTTCGGAT 1860965 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || |||||||| || || |||||||| || || ||||| ||| Sbjct 1860964 ACAATAGAGAATGTAAAGGCTAAGATTCAAGATAA-GAAGGAATTCCGCCTGACCAACAA 1860906 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || |||||||| ||||||||||| ||||| | |||||||| | Sbjct 1860905 CGTTTGATTTTTGCTGGCAAACAGCTTGAAGATGGAAGAACTCTCTCAGATTATAATATT 1860846 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || ||||| || || || ||||| || ||| |||| Sbjct 1860845 CAGAAAGAGTCTACTCTTCATCTGGTATTGCGACT 1860811 >seq7885 Length=810 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || |||||||| || || ||||| || || || || || ||| || || Sbjct 744 CAAATTTTTGTTAAAACTCTTACGGGTAAAACTATTACTCTGGAAGTTGAAGCTTCCGAT 685 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| || ||||| ||||||||||| || ||||| ||||| || Sbjct 684 ACCATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCCGACCAACAG 625 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || |||||||| | |||||||| | |||||| |||||||||| | Sbjct 624 AGATTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACTCTTTCCGATTATAATATT 565 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 |||||||||||||| || ||||| ||| | |||| Sbjct 564 CAAAAAGAATCAACCCTCCATCTCGTTCTACGACT 530 Score = 150 bits (166), Expect = 4e-31 Identities = 160/207 (77%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||||| || |||||| | ||||| || ||||| ||| || || Sbjct 516 CAAATTTTCGTTAAAACTCTTACGGGAAAACC-ATCACTCTGGAGGTTGAAGCTTCCGAT 458 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || || || || || || || ||| ||||| || || ||||| || ||||| || || || Sbjct 457 ACTATTGAAAATGTTAAGACTAAA-ATTCAAGATAAGGAAGGTATTCCTCCTGATCAACA 399 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 |||| ||||| || |||||||| | |||||||| | || ||| | ||||||||| | Sbjct 398 GAGACTGATCTTTGCAGGAAAACAATTAGAAGATGGTCGTACACTTTCGGATTATAACAT 339 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 ||| ||||||||||| || |||||||| Sbjct 338 CCAGAAAGAATCAACTCTTCATCTTGT 312 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||||| || |||||||| || || | || || ||| || || Sbjct 289 CAAATATTTGTAAAAACTCTTACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCTGAT 230 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || ||||| || || ||||| || || || || ||||| Sbjct 229 ACAATTGAAAATGTTAAAACTAAAATTCAAGATAAGGAAGGTATTCCACCAGATCAGCAG 170 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || ||||||||||||||||| | || ||| | |||||||| | Sbjct 169 AGATTGATTTTTGCTGGTAAACAGCTCGAAGATGGTCGTACACTTTCGGATTATAATATT 110 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||||||||||||||| ||| Sbjct 109 CAAAAAGAATCAACACTACAT 89 >seq3153 Length=1268 Score = 149 bits (164), Expect = 2e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||| || || |||||||| ||||| || || || ||| ||||| Sbjct 972 CAGATTTTTGTTAAAACCCTAACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTCAGAT 1031 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || || || || || ||||||||||| || || || || ||| Sbjct 1032 ACTATAGAGAATGTAAAGGCTAAAATCCAAGATAAAGAAGGAATTCCACCAGATCAACAA 1091 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| || || ||||| || ||||||||||| || || | ||||| || || Sbjct 1092 CGATTGATCTTTGCTGGTAAACAACTTGAAGATGGAAGAACACTCTCAGATTACAATATC 1151 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||||||||| ||||| ||| | || || ||||| Sbjct 1152 CAAAAAGAATCTACACTCCATTTAGTATTAAGACT 1186 >seq2112 Length=2858 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || |||||||| || ||||| || || || || || ||| || || Sbjct 168 CAAATTTTCGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTCCGAT 227 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||| ||||| ||||| ||||| || || || ||||| || Sbjct 228 ACAATTGAAAATGTAAAAGCAAAAATTCAAGACAAGGAAGGTATTCCACCTGACCAACAG 287 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || |||||||| | ||||||||| | || ||| |||||||||| | Sbjct 288 AGATTGATCTTTGCTGGAAAACAATTAGAAGATGGACGTACACTTTCCGATTATAATATT 347 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||| || || || ||||| Sbjct 348 CAAAAAGAATCGACTCTTCACCTTGT 373 Score = 129 bits (142), Expect = 1e-24 Identities = 121/154 (79%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 |||| || || || ||| || ||||| ||||||||||| || ||||| || || ||| Sbjct 1 CCATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCTGATCAACAAA 60 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 || | || || || |||||||| | |||||||| | |||||| |||||||||| | | Sbjct 61 GATTGATTTTTGCTGGAAAACAATTGGAAGATGGCCGTACTCTTTCCGATTATAATATTC 120 Query 178105 AAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 |||||||||| ||||| |||||||||||| |||| Sbjct 121 AAAAAGAATCTACACTTCATCTTGTTTTGCGACT 154 >seq182 Length=1849075 Score = 116 bits (128), Expect = 9e-21 Identities = 138/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||||||| | || || ||||| ||||| || || || ||| ||||| Sbjct 123027 CAGATATTTGTGAAAACTTTGACGGGTAAAACTATCACTCTTGAAGTAGAAGCATCAGAT 122968 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || |||||||| ||||||||||| || || || || ||| Sbjct 122967 ACTATAGAAAATGTGAAAGCTAAAATTCAGGATAAAGAAGGAATACCACCTGATCAACAA 122908 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| || || ||||| || | ||||||||| | ||| | | || ||||| | Sbjct 122907 CGTCTTATTTTTGCTGGAAAGCAATTAGAAGATGGACGTACTTTGTCGGACTATAATATT 122848 Query 178104 CAAAAAG 178110 ||||||| Sbjct 122847 CAAAAAG 122841 >seq878 Length=1131996 Score = 104 bits (114), Expect = 6e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| ||||| ||||||||||| || | || || ||| ||||| Sbjct 558650 CAAATTTTTGTCAAAACGCTCACTGGAAAAACGATTACTTTAGAAGTTGAAGCTTCAGAT 558709 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || |||||||| |||||||| || ||||| || || || Sbjct 558710 ACTATTGAAAATGTTAAAGCTAAAATTCAGGATAAAGAAGGTATTCCTCCCGATCAACAG 558769 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || | || || || |||||||| | |||||||| Sbjct 558770 AGATTGATTTTTGCTGGAAAACAATTGGAAGATGG 558804 >seq4594 Length=760 Score = 87.8 bits (96), Expect = 4e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 ||||| | ||||| || || ||||| || ||||||||||| |||||| | ||||||||| Sbjct 759 CAACGTTTAATCTTTGCTGGTAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAAC 700 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 | || |||||||| ||||| || | || |||||||| Sbjct 699 ATTCAGAAAGAATCTACACTTCACTTAGTGTTGAGACT 662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203608650383524