Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq15 102 8e-17 >seq15 Length=10167229 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 16031 AATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGT 16090 ||||||||||| |||||||| |||||||||||||| | | ||||| || ||||| | | Sbjct 2292688 AATCTATCTGCAACAAATTCGATATATTGACACATAAGTTTACAATTCATGCCTATCATT 2292747 Query 16091 CGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATA 16150 || || | || | ||| ||||||| |||||| || || || |||||||| || Sbjct 2292748 TCAACAGGTAATGCATCTGTCAAAAATTCTTGTTCAATTTTGACAGCATCTTTAATAATT 2292807 Query 16151 TCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAG 16210 ||| ||||| ||| ||| | || | |||||| ||||||| ||| || || Sbjct 2292808 GATGTGACTCGTTCACAAGATGGTTTTTGTACAATGTGTTTGAACATTAAACATGCAAAA 2292867 Query 16211 TCGCAATGTAGTCC 16224 || ||||||| ||| Sbjct 2292868 TCACAATGTAATCC 2292881 Score = 100 bits (110), Expect = 3e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || || |||||||| | ||| ||||||||||| || | || || ||||| | ||| Sbjct 2293313 ATGTATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGA 2293372 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591 || |||||||| || || ||||| | |||||||||||| ||||||||| | || Sbjct 2293373 AAACCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGA 2293432 Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATAT 16651 |||||||| || || || ||| || |||||||| || || | || || |||| | Sbjct 2293433 TTCTCATTAACAATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATATAAAATGT 2293492 Query 16652 TTTTC 16656 ||||| Sbjct 2293493 TTTTC 2293497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511380384549720