Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq8 140 2e-28 >seq8 Length=13546544 Score = 140 bits (154), Expect = 2e-28 Identities = 193/264 (73%), Gaps = 6/264 (2%) Strand=Plus/Minus Query 102005 CCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGA 102064 |||||||| |||||||| | | |||||||| ||| || ||||| ||||| ||| Sbjct 1794549 CCTTCTCCATTATAATCTTTGTACATATCTTTATATGTTGCACCAAAATGTCTCCATTGA 1794490 Query 102065 AATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTC-ATAAAAAC-CAAGTTTATCTA 102122 |||||||| | ||| || | ||||||||| ||||| || |||||| | |||| ||||| Sbjct 1794489 AATCCATAAATAGGACCTAAATCTCCTTCTTCTCTATCTATAAAACCACAAGA--ATCTA 1794432 Query 102123 AAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGAT-AGCTCTTTG 102181 | ||| | || | ||| ||||||||||| || || | | | | | |||||| Sbjct 1794431 AGAATTCACGTGAACTATTTGCATCCCAAATATGAACATCCTTTTCACTTAATTTCTTTG 1794372 Query 102182 CTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACT 102241 | | || |||||| | |||||||| |||| ||| || || |||||| |||||||||| Sbjct 1794371 C-ATTTGTGGATCCTTTAATAAACCATAACAATTCCTCCACTACACCTTTCCAAAATACG 1794313 Query 102242 CTCTTAGTAGTTAAAAGTGGAAAT 102265 | || |||||||| | ||||||| Sbjct 1794312 CGTTTTGTAGTTAATAATGGAAAT 1794289 Score = 89.7 bits (98), Expect = 4e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 101772 AAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATC 101831 || |||| | |||||| ||||| |||||||| || || | |||||||| || || Sbjct 1794864 AAATTAATAAAGAATAAGATGCAATATTAAATGGTACACCAAGACCCATATCCGCACTTC 1794805 Query 101832 TTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATACATGAC 101891 ||||||| ||||| || || | | | ||| | |||||||||||| || ||||| Sbjct 1794804 TTTGATAAAGTTGGCATGATAATTCTTCATTGCTTACATAAAATTGAACGAAACAATGAC 1794745 Query 101892 AAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTC 101951 |||| || || ||||||| ||||| || |||||| || ||||| || |||| Sbjct 1794744 AAGGAGGTAAAGCCATTTTTGGAATATCAATTGGATTCCATGCTGTCATTATAATTCTTC 1794685 Query 101952 TATC 101955 |||| Sbjct 1794684 TATC 1794681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361227772972571