Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq15 161 1e-34 seq6 154 2e-32 >seq15 Length=10167229 Score = 161 bits (178), Expect = 1e-34 Identities = 162/208 (78%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 24405 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 24464 ||||||||||| || | | ||||||||| ||||||| ||||| ||||| | |||||| Sbjct 2293316 TATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAA 2293375 Query 24465 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTT 24524 || |||||||| | ||||| || || ||||||||| || ||||||||| | | ||| Sbjct 2293376 CCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGATTC 2293435 Query 24525 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 24584 ||||| || ||||| ||| ||||||||||| || || ||||| |||||||| |||| Sbjct 2293436 TCATTAACAATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATATAAAATGTTTT 2293495 Query 24585 TCGTCTGG-TGTTAGTTTATTCCAATCA 24611 || |||| |||| |||||||||||| Sbjct 2293496 TC-ACTGGCAGTTAAATTATTCCAATCA 2293522 Score = 114 bits (126), Expect = 2e-20 Identities = 92/111 (83%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 24619 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 24678 ||||||| | |||||||||||| ||||||||||| ||||| || || ||||||||||| | Sbjct 2293605 CTTTAGAAAGATCCACTTCTTCTACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTT 2293664 Query 24679 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 24729 ||| || ||| | | ||||| ||||||| |||||||||| |||||||| Sbjct 2293665 GCCAAATATCAGGCCACTGAATAGGAAAAACAACAAATCTACGTGGATTTT 2293715 Score = 107 bits (118), Expect = 2e-18 Identities = 159/224 (71%), Gaps = 10/224 (4%) Strand=Plus/Plus Query 23941 TTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCA 24000 ||||| | || ||||| || |||||||||||| ||||| || |||||| ||| | Sbjct 2292665 TTTTACAACCTAATTCTACAAGCAATCTATCTGCAACAAATTCGATATATTGACACATAA 2292724 Query 24001 TTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAA 24060 || ||||||||| ||||| | || ||| || | || | || | |||||||||||||| Sbjct 2292725 GTTTACAATTCATGCCTATCATTTCAACAGGTAATGCATCTGTCAAAAATTCTTGTTCAA 2292784 Query 24061 TAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGG-----ATACAA 24115 | ||| || ||| | ||||| ||| | || | ||||| | ||| ||||| Sbjct 2292785 TTTTGACAGCATCTTTAATAATTGATGTGAC---TCGTTCACAAGATGGTTTTTGTACAA 2292841 Query 24116 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCT 24159 | ||||| ||||| |||||||| ||||| || |||| |||| Sbjct 2292842 T--GTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 2292883 Score = 98.7 bits (108), Expect = 1e-15 Identities = 154/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||||| ||| | || ||| ||| || ||||| ||||| || || | ||||| Sbjct 2292988 CCTCATCTCTAGAAATAAGCTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTCTTTT 2293047 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | ||| || || | ||||| ||| ||||||||| ||||||||||| ||||| | Sbjct 2293048 TTAACCAGAAAATAGCGGCAAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 2293107 Query 24277 CAATAAGTCTTTCTCCATAACCGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGG 24333 ||| | | ||| | || || || ||||| |||||| ||| ||||||| | Sbjct 2293108 CAACTACACGTTCAGGAAAAGTAGCACTTTCATGATTTATCCAATTTAACGCCCAATGAG 2293167 Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 24373 | || ||| ||||| |||| | || ||||||||||| Sbjct 2293168 CTTTTTTTGCAACACATGGCAAATTTTCAATAGCATTAAA 2293207 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890 ||| |||||| |||||| ||||| ||||| |||||| || || || || |||||||| Sbjct 2292484 CATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTCTTACCTTC 2292543 Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATT 23923 ||| || |||| |||||||||||| | ||||| Sbjct 2292544 TAAAGAAATATGTTCCATGAAATCAAACGGATT 2292576 >seq6 Length=18472937 Score = 154 bits (170), Expect = 2e-32 Identities = 168/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 53057 TGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 53116 || ||||| ||| || | | ||||| ||| || || || |||| ||| | | ||| Sbjct 6969919 TGTATAGAGCCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTCTT 6969860 Query 53117 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 53176 || |||||| ||| | | ||| ||||| || |||||||| ||||| || | ||||| Sbjct 6969859 TCAGTTAAATCTCGCAATAAATGAGGATTTACAACTTGAAACTCTCCTGATAGAACTCTT 6969800 Query 53177 CGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCA 53236 | ||||||||||| ||||| || ||||| | ||| ||||||||||| |||||||| || Sbjct 6969799 CTTGTGTAAATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGCT 6969740 Query 53237 GTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 53279 |||||||| || ||||||||||| | || ||| |||||||| Sbjct 6969739 GTTGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAA 6969697 Score = 122 bits (134), Expect = 1e-22 Identities = 221/321 (69%), Gaps = 12/321 (4%) Strand=Plus/Minus Query 53550 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 53609 |||| |||||||||||||| ||| || || ||||||||||| ||||||||||| | Sbjct 6969272 TACCTATAGGTCTATGTCTAAAATTTGATTTTCTTGCTTCTGGAATGGGATAATAATTGA 6969213 Query 53610 TATCTATAATTTTATTGAGGTTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 53666 ||| |||||||| | || || | | |||||| |||| || | | ||||| Sbjct 6969212 CATCGATAATTTTGTCCAGATTACAAGTAACAATT--TTTG-TTACTTTCAGAAGTTTTT 6969156 Query 53667 GAAAATCAAATTGTCCATCTA------TTACAAACATGTTCAATGCAATAGATGCCAGAT 53720 ||||||||||| | || | |||||||||| || | ||||| || || | || Sbjct 6969155 GAAAATCAAATGTTTGATTAATGGGATTTACAAACATATTAACAGCAATTGAAGCTAAAT 6969096 Query 53721 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 53780 |||| || || || |||| | | | ||| || | | || || || | |||||||| Sbjct 6969095 TACACACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTAC 6969036 Query 53781 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 53840 ||| || ||||||| |||||| ||||| || || || ||| |||||||| | Sbjct 6969035 TCTTTATTGTTCCTATATTTTGATGATTTGATTTGCGATTGCAGTGATCTTTATAAAGCA 6968976 Query 53841 TGAATGGCGTACCAGTTTCAA 53861 | |||| || || ||||||| Sbjct 6968975 TATATGGAGTTCCTGTTTCAA 6968955 Score = 100 bits (110), Expect = 3e-16 Identities = 124/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 53937 GTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 53996 ||||||| | |||||| || | |||||||||| |||| |||||| |||||| | Sbjct 6968627 GTGTATAGAGAATTTCAAATTCATTGCCCCAAACATCAGCCAAACCAGGAGATTCATGTG 6968568 Query 53997 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 54056 ||||||| || | ||| | | |||| |||||||||||||| |||||||| |||| Sbjct 6968567 GACACATTAAAGTCCATATATCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCC 6968508 Query 54057 AAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 54102 | | ||| ||| |||| ||||| | ||||| ||| || || ||||| Sbjct 6968507 ATAAAGC-ATAGAATAATTCTCTTGCTCTATTTTCTTCTTTACCTGT 6968462 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 53384 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 53443 ||| |||| || || |||| |||| | ||||| |||||||| || || || || ||| Sbjct 6969507 CCTTCATAAGTTTCATATGTACCTTTTTCTTCAGCAAGTTCACAGCTGGCTTCCAAAGCA 6969448 Query 53444 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 53503 || ||||| | ||||| || || | |||| || | ||||||||| || |||||| Sbjct 6969447 CCATAATATAGTGTTTCAAATATTTGAATATTAAGTTTTTGTGCTTCTTCACTTTCAAAT 6969388 Query 53504 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 53553 |||||| | | || ||| || ||||| | ||||||| |||||||| Sbjct 6969387 GGATAACGCATTAAAAGAAATGCATCTGCAAGACCTTGAATTCCAATACC 6969338 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 ||||||| ||||||||||| || ||||| | || | ||| ||||| | || Sbjct 6970190 TCCATCCATAAAAATGCATTGAAGTAAGTTTTTCTGTTGTTGGTTTTGCCATATGAACAT 6970131 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | ||||| |||||| || || || || | ||||| |||||||||| || | | Sbjct 6970130 TTAATGATTGTGATTGATCTATAAATGCACCACGATCTGCTGCCATTTTTAAAATTATTT 6970071 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAA 53024 ||||||| |||||||||| |||||||||| Sbjct 6970070 TTTGTGGTATTTCCCAAACTGTTTTATAAA 6970041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593682110092080