Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq6 118 9e-22 seq1 113 4e-20 >seq6 Length=18472937 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || |||||||| | || || ||||| ||||| ||| ||| | | Sbjct 4824965 AATGCAAATTTTTGTCAAAACACTCACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTC 4825024 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | || |||| |||||| |||||||||||| | || ||||| Sbjct 4825025 AGATACTATTGAAAATGTTAAAGCCAAAATTCAGGATAAAGAAGGTATTCCTCCTGATCA 4825084 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| ||| | |||||||| || ||||||||||||||| ||| | |||||||||| Sbjct 4825085 ACAGAGATTAATCTTTGCCGGTAAACAACTGGAAGATGGTCGTACTCTTTCCGATTACAA 4825144 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||| || |||||||| ||||| | || || ||| | || || || Sbjct 4825145 TATTCAAAAAGAATCTACACTTCATCTTGTTTTGCGACTTCGCGGTGG 4825192 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || |||||||| | || || ||||| ||||| ||| ||| | | Sbjct 4824737 AATGCAAATTTTTGTCAAAACACTCACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTC 4824796 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | || |||| |||||| |||||||||||| | || ||||| Sbjct 4824797 AGATACTATTGAAAATGTTAAAGCTAAAATTCAGGATAAAGAAGGTATTCCTCCTGATCA 4824856 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| ||| | |||||||| || ||||| ||||||||| ||| | |||||||||| Sbjct 4824857 ACAGAGATTGATCTTTGCCGGTAAACAGCTGGAAGATGGTCGTACTCTTTCCGATTACAA 4824916 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||| || |||||||| ||||| | || || ||| | || || || Sbjct 4824917 TATTCAAAAAGAATCTACACTTCATCTTGTTTTGCGACTTCGTGGTGG 4824964 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| ||||||| | || || || || ||||| |||| ||| | || Sbjct 4825422 ATGCAAATTTTCGTCAAAACCCTTACAGGAAAGACTATTACTCTCGAAGTTGAAGCTTCA 4825481 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || |||| |||||| |||||||||||| | || ||||||| Sbjct 4825482 GATACCATTGAAAATGTTAAAGCCAAAATTCAGGATAAAGAAGGTATTCCTCCAGATCAA 4825541 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | |||||||| || ||||||||||||||| ||| | ||||||| ||| Sbjct 4825542 CAGAGATTGATCTTTGCCGGTAAACAACTGGAAGATGGTCGTACTCTTTCCGATTATAAT 4825601 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || ||||| || ||||| | || ||||| | || || || Sbjct 4825602 ATTCAAAAAGAATCGACCCTTCATCTCGTTCTACGACTTCGCGGTGG 4825648 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| ||||||| | || || || || ||||| ||| ||| | | Sbjct 4826333 AATGCAAATTTTCGTCAAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAAGCTTC 4826392 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | || |||||| || ||||||||| | ||| ||||| Sbjct 4826393 CGATACCATTGAAAATGTGAAAGCCAAAATTCAAGACAAAGAAGGTATTCCCCCTGATCA 4826452 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| ||| | |||||||| || ||||||||||| ||| ||| | |||||||||| Sbjct 4826453 ACAGAGATTAATCTTTGCTGGTAAACAACTGGAGGATGGTCGTACTCTTTCCGATTACAA 4826512 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||| || || ||||| ||||| | || || ||| | || || || Sbjct 4826513 TATTCAAAAAGAGTCTACACTTCATCTTGTTTTGCGACTTCGTGGTGG 4826560 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| ||||||| | || || |||||||| || || ||| | | Sbjct 4826105 AATGCAAATTTTCGTCAAAACTCTTACCGGAAAAACCATCACTTTGGAGGTTGAAGCATC 4826164 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || |||| |||||| ||||| || ||| | || |||||| Sbjct 4826165 CGATACTATTGAAAATGTTAAAACTAAAATTCAAGATAAGGAGGGTATCCCTCCAGATCA 4826224 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTAC 29138 || ||| | || ||||| || ||||||||||||||| || | ||| | | |||||| Sbjct 4826225 GCAGAGATTGATTTTTGCTGGTAAACAACTGGAAGATGGTCGTACACTTT--CGGATTAC 4826282 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||| || ||||| || || || | || || || || |||||||| Sbjct 4826283 AATATTCAAAAAGAATCAACACTACATTTAGTATTGCGTTTGCGAGGAGG 4826332 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| ||||||| | || || || || ||||| ||| ||| | | Sbjct 4825650 ATGCAAATTTTCGTCAAAACCCTTACAGGAAAGACTATTACTCTTGAAGTAGAAGCTTCT 4825709 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || || ||| || ||||||||| | || || ||| Sbjct 4825710 GATACTATTGAAAATGTAAAAGCTAAGATTCAAGACAAAGAAGGTATTCCTCCTGACCAA 4825769 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | |||||||| || |||||| | |||||| ||| | ||||||||||| Sbjct 4825770 CAAAGATTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACTCTTTCCGATTACAAT 4825829 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || |||||||| ||||| | || ||||| | || || || Sbjct 4825830 ATTCAAAAAGAATCTACACTTCATCTCGTTCTACGACTTCGTGGTGG 4825876 >seq1 Length=29893408 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || ||||||| | || ||||| || |||||| ||| ||| | || Sbjct 27605205 ATGCAAATCTTTGTCAAAACTCTCACTGGCAAGACAATTACCTTAGAAGTTGAAGCTTCA 27605146 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || |||| || ||| ||||||||||| | || ||||| Sbjct 27605145 GACACAATAGAGAATGTTAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCAG 27605086 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| || | |||||||| |||||||| || |||||| | ||| | | ||||| ||| Sbjct 27605085 CAACGATTGATCTTTGCTGGCAAACAGCTTGAAGATGGAAGAACACTCTCAGATTATAAT 27605026 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||| |||||||||||||| |||| || || | |||||||| Sbjct 27605025 ATTCAGAAAGAATCTACTCTTCATCTGGTATTGAGACTTCGAGGAGG 27604979 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 28957 TAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAAC 29016 |||||||||| || || | || || || || || |||||||| ||| ||| ||| Sbjct 27605438 TAAAAATGCAGATCTTTGTTAAGACTTTAACAGGAAAAACCATCACCTTAGAAGTTGAAG 27605379 Query 29017 CCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAG 29076 | |||| || | | || | ||| || ||| ||||||||||| | || || Sbjct 27605378 CTTCAGACACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCAG 27605319 Query 29077 ATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATT 29136 |||||||| | | || ||||| ||||||||||| |||||| | ||| | | |||| Sbjct 27605318 ATCAACAACGTTTAATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTTTCAGATT 27605259 Query 29137 ACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 | ||||| || ||||||||||| ||||| | ||||| || | ||||||| Sbjct 27605258 ATAATATCCAAAAGGAATCTACACTTCATTTAGTGTTGAGACTTAGAGGAGG 27605207 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | || ||||||||| | | |||||||| || |||||| | ||| Sbjct 27602000 GACAAAGAAGGAATTCCTCCTGATCAACAACGTTTAATCTTTGCTGGTAAACAATTAGAA 27601941 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | ||| | | ||||||||||||||||| |||||||||||||| |||| ||| Sbjct 27601940 GATGGAAGAACACTCTCAGATTACAATATTCAGAAAGAATCTACTCTTCATCTGGTATTA 27601881 Query 29175 CGATTACGAGGAGG 29188 || | |||||||| Sbjct 27601880 AGACTTCGAGGAGG 27601867 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || ||||||| | || || |||||||||||| ||| ||| | || Sbjct 27604749 ATGCAAATCTTTGTCAAAACTCTCACTGGTAAAACCATTACCTTAGAAGTTGAAGCTTCA 27604690 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || |||| || ||| || |||||||| | || |||||| Sbjct 27604689 GATACAATAGAGAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAA 27604630 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | |||||||| || |||||| | |||||| | |||| | | ||||| || Sbjct 27604629 CAACGTTTAATCTTTGCTGGTAAACAATTAGAAGATGGAAGAACTCTTTCAGATTATAAC 27604570 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||| ||||| || |||||| | ||||| || | ||||| || Sbjct 27604569 ATTCAGAAAGAATCCACACTTCACTTAGTGTTGAGACTTCGAGGGGG 27604523 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | || ||||||||| | | || ||||| || |||||||| ||| Sbjct 27602228 GACAAAGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTTGCTGGAAAACAACTTGAA 27602169 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | ||| | | ||||||||||||||||| |||||||||||||| |||| || Sbjct 27602168 GATGGAAGAACACTCTCAGATTACAATATTCAGAAAGAATCTACTCTTCATTTGGTATTG 27602109 Query 29175 CGATTACGAGGAGG 29188 || | |||||||| Sbjct 27602108 AGACTTCGAGGAGG 27602095 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | || ||||||||| | | || ||||| || ||||| || ||| Sbjct 27602684 GACAAAGAAGGAATTCCTCCTGATCAACAACGTTTGATTTTTGCTGGAAAACAGCTTGAA 27602625 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | ||| | | ||||||||||||||||| |||||||||||||| |||| ||| Sbjct 27602624 GATGGAAGAACACTCTCAGATTACAATATTCAGAAAGAATCTACTCTTCATCTGGTATTA 27602565 Query 29175 CGATTACGAGGAGG 29188 || | |||||||| Sbjct 27602564 AGACTTCGAGGAGG 27602551 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || ||||||| | || || ||||| || || ||| ||| | | Sbjct 27602550 AATGCAAATTTTTGTCAAAACTCTAACTGGGAAAACTATCACTCTTGAAGTTGAAGCTTC 27602491 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | | | ||| || ||| || |||||||| | || ||||| Sbjct 27602490 AGATACAATAGAAAACGTAAAGGCTAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCA 27602431 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||| | | |||||||| || |||||| | |||||| | ||| | | |||||||| Sbjct 27602430 ACAACGTTTAATCTTTGCTGGTAAACAATTAGAAGATGGAAGAACACTCTCAGATTACAA 27602371 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||| |||||||||||||| |||| || || | ||||| || Sbjct 27602370 TATTCAGAAAGAATCTACTCTTCATCTGGTATTGAGACTTCGAGGGGG 27602323 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | || ||||| ||| || | |||||||| || ||||| || ||| Sbjct 27601772 GACAAAGAAGGAATTCCTCCTGATCAGCAACGATTGATCTTTGCTGGAAAACAGCTTGAA 27601713 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | ||| | | ||||||||||||||||| |||||||||||||| |||| || Sbjct 27601712 GATGGAAGAACACTCTCAGATTACAATATTCAGAAAGAATCTACTCTTCATCTGGTATTG 27601653 Query 29175 CGATTACGAGGAGG 29188 || | || ||||| Sbjct 27601652 AGACTTCGTGGAGG 27601639 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | ||||| | || || ||||| ||||| ||| ||| | | Sbjct 27601638 AATGCAAATCTTTGTTAAAACTCTTACTGGAAAAACTATTACACTTGAAGTTGAAGCTTC 27601579 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | ||| || ||| ||||||||||| | || ||||| Sbjct 27601578 GGATACCATAGAAAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCA 27601519 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| || | || ||||| || |||||||| |||||| | ||| | |||||||| Sbjct 27601518 GCAACGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACACTCTTAGATTACAA 27601459 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||| |||||||| | ||| |||| || || | |||||||| Sbjct 27601458 TATTCAGAAAGAATCTACATTGCACTTGGTATTGAGACTTCGAGGAGG 27601411 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || ||||||| | || || ||||| || || ||| ||| | | Sbjct 27604978 AATGCAAATTTTTGTCAAAACTCTTACTGGAAAAACTATCACACTTGAAGTTGAAGCTTC 27604919 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | || | ||| || ||| || |||||||| | ||| ||||| Sbjct 27604918 AGACACAATAGAAAATGTAAAGGCTAAGATTCAAGACAAAGAAGGAATTCCCCCTGATCA 27604859 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| | | |||||||| || |||||||| |||||| | |||| | | ||||| || Sbjct 27604858 GCAACGCTTGATCTTTGCTGGTAAACAACTAGAAGATGGAAGAACTCTCTCAGATTATAA 27604799 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||| || ||||||||||| || || | ||||| || | ||||||| Sbjct 27604798 TATCCAAAAGGAATCTACACTCCATTTAGTGTTGAGACTTAGAGGAGG 27604751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428308222544255