Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq6 87.8 2e-12 seq1 86.0 6e-12 >seq6 Length=18472937 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| ||||| || || || ||||||||||| | || || ||||| | Sbjct 4826105 AATGCAAATTTTCGTCAAAACTCTTACCGGAAAAACCATCACTTTGGAGGTTGAAGCATC 4826164 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | ||| | || ||||||| || || ||||| ||||| | || || Sbjct 4826165 CGATACTATTGAAAATGTTAAAACTAAAATTCAAGATAAGGAGGGTATCCCTCCAGATCA 4826224 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | || | || || ||||| ||||| || | || || || || ||||| Sbjct 4826225 GCAGAGATTGATTTTTGCTGGTAAACAACTGGAAGATGGTCGTACACTTTCGGATTACAA 4826284 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || || || | || || ||| |||| ||||| ||| | || || Sbjct 4826285 TATTCAAAAAGAATCAACACTACATTTAGTATTGCGTTTGCGAGGAGG 4826332 >seq1 Length=29893408 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| ||||| ||||| || || ||| | || || ||||| | Sbjct 27605205 ATGCAAATCTTTGTCAAAACTCTCACTGGCAAGACAATTACCTTAGAAGTTGAAGCTTCA 27605146 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | || | || |||| || ||||| || || || | || ||| Sbjct 27605145 GACACAATAGAGAATGTTAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCAG 27605086 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTACA 40867 |||||| | |||| || ||||||||||| || || | || ||| |||| || || | Sbjct 27605085 CAACGATTGATCTTTGCTGGCAAACAGCTTGAAGATGGAAGAACACTCTCA--GATTATA 27605028 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 | || ||||| || | || || ||||| || ||| Sbjct 27605027 ATATTCAGAAAGAATCTACTCTTCATCTGGTATTG 27604993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515184931482960