Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq8 140 2e-28 >seq8 Length=13546544 Score = 140 bits (154), Expect = 2e-28 Identities = 189/261 (72%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 97369 CCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGG 97428 ||||||||| ||||| | | | | ||| |||| ||| |||||||| |||||||| Sbjct 1794549 CCTTCTCCATTATAATCTTTGTACATATCTTTATATGTTGCACCAAAATGTCTCCATTGA 1794490 Query 97429 AATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAA 97488 |||||||||| ||| || | ||||||||||||||||| |||||| |||||| Sbjct 1794489 AATCCATAAATAGGACCTAAATCTCCTTCTTCTCTATCTATAAAACCACAAGAATCTAAG 1794430 Query 97489 TAGGACCTAGATCCATTTGCATCCCAAATGTGCACA-CCAGATGCTGCAAGCTCTTTGCT 97547 | | || | ||||||||||||||| || ||| || | || ||||||| Sbjct 1794429 AATTCACGTGAACTATTTGCATCCCAAATATGAACATCCTTTTCACTTAATTTCTTTGC- 1794371 Query 97548 GTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCT 97607 | || |||||| | |||||||| |||||||| ||||| |||||| |||||||||| | Sbjct 1794370 ATTTGTGGATCCTTTAATAAACCATAACAATTCCTCCACTACACCTTTCCAAAATACGCG 1794311 Query 97608 CTTAGTTGTTAAGAGAGGAAA 97628 || || ||||| | ||||| Sbjct 1794310 TTTTGTAGTTAATAATGGAAA 1794290 Score = 96.9 bits (106), Expect = 2e-15 Identities = 167/241 (69%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 97132 ATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCT 97191 ||| || |||||| |||||| ||||| ||||| || || || || |||||||| || Sbjct 1794868 ATATAAATTAATAAAGAATAAGATGCAATATTAAATGGTACACCAAGACCCATATCCGCA 1794809 Query 97192 GATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACA 97251 ||||||||| | || || || | | | ||| | |||||||| ||| || | Sbjct 1794808 CTTCTTTGATAAAGTTGGCATGATAATTCTTCATTGCTTACATAAAATTGAACGAAACAA 1794749 Query 97252 TGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATT 97311 ||||| || || || ||||||||||||| ||| | |||||| || ||| | ||| Sbjct 1794748 TGACAAGGAGGTAAAGCCATTTTTGGAATATCAATTGGATTCCATGCTGTCATTATAATT 1794689 Query 97312 CTTCTATCGGTTGGGTTTGTGT-GTATGGTATTAATTATCTGCTTTAATTGATCAANNCC 97370 |||||||| ||||| | | |||| ||| || | | ||||||||||||| || Sbjct 1794688 CTTCTATC-ATTGGGAGAATATCGTATCTTATCTATAACTTCTTTTAATTGATCAATACC 1794630 Query 97371 T 97371 | Sbjct 1794629 T 1794629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346761511165970