Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq6 120 3e-22 seq1 114 1e-20 >seq6 Length=18472937 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || || | ||| || || || | ||| || ||||||||||| |||||||| Sbjct 4826332 CCTCCTCGCAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTGTAATCCGAA 4826273 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || ||| || || ||||| ||||| | || | | ||||||||| ||||| Sbjct 4826272 AGTGTACGACCATCTTCCAGTTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGAGGG 4826213 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 || |||||||| ||| |||||| |||||| | ||| | || || | |||| || || Sbjct 4826212 ATACCCTCCTTATCTTGAATTTTAGTTTTAACATTTTCAATAGTATCGGATGCT-TCAAC 4826154 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | || | ||||| ||||| |||||||| || ||||| ||||| Sbjct 4826153 CTCCAAAGTGATGGTTTTTCCGGTAAGAGTTTTGACGAAAATTTGCAT 4826106 Score = 113 bits (124), Expect = 4e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| || || || | ||| || ||||||||||| || ||||| | || || ||| Sbjct 4826090 CAATACTAAATGTAATGTTGATTCTTTTTGAATATTATAATCCGAAAGTGTACGACCATC 4826031 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || |||||||| ||||| | || | | ||||||||| ||||| || |||||||| || Sbjct 4826030 TTCCAGCTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGAGGAATACCCTCCTTATC 4825971 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCG 118704 | |||||| |||||| | ||||| || || | |||| || ||||| | || | | Sbjct 4825970 TTGAATTTTAGTTTTAACATTTTCGATAGTATCGGATGCT-TCAACCTCCAAAGTGATGG 4825912 Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| ||||| ||||| || || ||||| ||||| Sbjct 4825911 TTTTTCCGGTAAGAGTCTTAACGAAAATTTGCAT 4825878 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || ||| || | || | |||||||||||||||||| ||||||||| Sbjct 4826562 TACCACCACGAAGTCGCAAAACAAGATGAAGTGTAGACTCTTTTTGAATATTGTAATCGG 4826503 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || |||||| || ||||| ||||| |||| | | ||| ||||| || | Sbjct 4826502 AAAGAGTACGACCATCCTCCAGTTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGGG 4826443 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || |||||| |||||| ||| || | ||| | ||| || | ||| || Sbjct 4826442 GAATACCTTCTTTGTCTTGAATTTTGGCTTTCACATTTTCAATGGTATCGGAAGCT-TCT 4826384 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | || || || || |||||||| || ||||| ||||| Sbjct 4826383 ACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTGACGAAAATTTGCAT 4826334 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GCTCATAGTGCGCGTATCCTC 118588 || || || | ||| |||||||||||||| || ||||| | | || || ||| ||| || Sbjct 4824718 ACTAAATGTAGTGTTGACTCTTTTTGAATATTATAATCAGATAAT-GTACGCCCATCTTC 4824660 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||||| ||||| |||| | | |||||||| || || || || ||||||||| Sbjct 4824659 TAATTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTG 4824600 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||||| ||| || | ||| | ||| || | | ||| ||||| | || | ||||| Sbjct 4824599 AATTTTCGCTTTTACATTTTCAATGGTATCTGAGGCCTCAACCTCCAGAGTTATTGTTTT 4824540 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || |||| ||||| ||||| ||||||||| Sbjct 4824539 ACCTGTCAATGTTTTGACAAAGATCTGCATG 4824509 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | || ||| || | || | |||||| ||||||||||| ||||||||| Sbjct 4825194 TACCACCGCGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGG 4825135 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||| || || ||||| || || |||| | | ||| ||||| |||| Sbjct 4825134 AAAGAGTACGACCATCTTCCAGTTGTTTACCGGCAAAGATTAATCTCTGTTGATCAGGAG 4825075 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || || || |||||| |||||| | ||| | || || | ||| || Sbjct 4825074 GAATACCTTCTTTATCCTGAATTTTGGCTTTAACATTTTCAATAGTATCTGAAGCT-TCA 4825016 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||| || || || ||||| |||||||| ||||| Sbjct 4825015 ACTTCTAAAGTAATAGTTTTTCCAGTGAGTGTTTTGACAAAAATTTGCAT 4824966 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || ||| || | || | |||||||||||||||||| ||||||||| Sbjct 4825422 TACCACCACGAAGTCGCAAAACAAGATGAAGTGTAGACTCTTTTTGAATATTGTAATCGG 4825363 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||| || | ||||||||||| |||| | | ||| || || |||| Sbjct 4825362 AAAGAGTACGACCATCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGAG 4825303 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || |||||| ||| || ||| || | ||| | ||| || | ||| || Sbjct 4825302 GAATACCTTCTTTGTCTTGAATCTTAGCTTTTACATTTTCAATGGTATCAGAAGCT-TCT 4825244 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||| || || || ||||| || ||||| ||||| Sbjct 4825243 ACTTCAAGAGTAATAGTTTTTCCTGTAAGGGTTTTGACGAAAATTTGCAT 4825194 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || || | || ||| || | || | |||||| ||||||||||| ||||||||| Sbjct 4824964 CCACCACGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAA 4824905 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || ||| || |||||||| || || |||| | | ||| ||||| ||||| Sbjct 4824904 AGAGTACGACCATCTTCCAGCTGTTTACCGGCAAAGATCAATCTCTGTTGATCAGGAGGA 4824845 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 || || || || || |||||| |||||| | ||| | || || | ||| || || Sbjct 4824844 ATACCTTCTTTATCCTGAATTTTAGCTTTAACATTTTCAATAGTATCTGAAGCT-TCAAC 4824786 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | ||||| || || || ||||| |||||||| ||||| Sbjct 4824785 TTCTAAAGTAATAGTTTTTCCAGTGAGTGTTTTGACAAAAATTTGCAT 4824738 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || ||||||||||| || |||||| | || || ||| || |||||||| ||| Sbjct 4826758 GTCGATTCTTTTTGAATATTATAATCGGAAAGTGTACGACCATCTTCCAGCTGTTTACCA 4826699 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || | | ||| ||||| ||||| || || || |||||| ||||||| ||| Sbjct 4826698 GCAAAAATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTCTTGAATTTTTGCTTTT 4826639 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | ||| | ||||| | ||| || || || | || | ||||| || || ||||| Sbjct 4826638 ACATTTTCAATTGTGTCAGAAGCT-TCAACTTCAAGAGTAATAGTTTTACCCGTGAGAGT 4826580 Query 118721 TTTTACAAAAATCTGCAT 118738 || |||||||| ||||| Sbjct 4826579 CTTGACAAAAATTTGCAT 4826562 >seq1 Length=29893408 Score = 114 bits (126), Expect = 1e-20 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | |||||| |||||||| | |||||| ||||| ||||| |||||||| | Sbjct 27601411 CCTCCTCGAAGTCTCAATACCAAGTGCAATGTAGATTCTTTCTGAATATTGTAATC--TA 27601468 Query 118572 ATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||| | | ||| || || ||||||||||| | || | || |||||||| |||| Sbjct 27601469 AGAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATCAGGAG 27601528 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || || ||| ||| || || || | ||| | ||| |||| ||| || Sbjct 27601529 GAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTTTCTATGGTATCCGAAGCT-TCA 27601587 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||| || || |||||||| ||||| || ||||| Sbjct 27601588 ACTTCAAGTGTAATAGTTTTTCCAGTAAGAGTTTTAACAAAGATTTGCAT 27601637 Score = 114 bits (126), Expect = 1e-20 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | |||||| |||| || | ||||| ||||| ||||| |||||||| | Sbjct 27601639 CCTCCACGAAGTCTCAATACCAGATGAAGAGTAGATTCTTTCTGAATATTGTAATC--TG 27601696 Query 118572 ATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||| | | ||| || |||||||||||||| |||| | || |||||||| |||| Sbjct 27601697 AGAGTGTTCTTCCATCTTCAAGCTGTTTTCCAGCAAAGATCAATCGTTGCTGATCAGGAG 27601756 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || |||||| ||| || ||| || | ||| | || || | ||| || Sbjct 27601757 GAATTCCTTCTTTGTCTTGAATCTTAGCTTTTACGTTTTCTATTGTATCTGAAGCT-TCA 27601815 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||| || || |||||||| |||||||| ||||| Sbjct 27601816 ACTTCAAGAGTGATAGTTTTCCCAGTTAGAGTTTTGACAAAAATTTGCAT 27601865 Score = 105 bits (116), Expect = 6e-18 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | |||||| ||||| || | ||||| ||||| ||||| |||||||| | Sbjct 27602095 CCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTGTAATC--TG 27602152 Query 118572 ATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||| | | ||| || || ||||||||||| | || | ||| || ||||| |||| Sbjct 27602153 AGAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAAACGTTGTTGATCAGGAG 27602212 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || |||||| ||| || || || | || | || |||| ||| || Sbjct 27602213 GAATTCCTTCTTTGTCTTGAATCTTAGCCTTTACGTTCTCTATTGTATCCGAAGCT-TCA 27602271 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| | || | ||||| || || |||||||| ||||| || ||||| Sbjct 27602272 ACCTCAAGAGTGATAGTTTTTCCAGTTAGAGTTTTGACAAAGATTTGCAT 27602321 Score = 102 bits (112), Expect = 7e-17 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | ||| || |||| || | ||||| ||||| ||||| |||||||| | Sbjct 27602551 CCTCCTCGAAGTCTTAATACCAGATGAAGAGTAGATTCTTTCTGAATATTGTAATC--TG 27602608 Query 118572 ATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||| | | ||| || |||||||||||||| | || | ||| || ||||| |||| Sbjct 27602609 AGAGTGTTCTTCCATCTTCAAGCTGTTTTCCAGCAAAAATCAAACGTTGTTGATCAGGAG 27602668 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || |||||| ||| || ||| || | || | || || | ||| || Sbjct 27602669 GAATTCCTTCTTTGTCTTGAATCTTAGCTTTTACGTTCTCTATTGTATCTGAAGCT-TCA 27602727 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || | || | ||||| || || |||||||| |||||||| |||||| Sbjct 27602728 ACTTCAAGAGTGATAGTTTTCCCAGTAAGAGTTTTAACAAAAATTTGCATG 27602778 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | ||| || |||| || | ||||| ||||| ||||| |||||||| | Sbjct 27601867 CCTCCTCGAAGTCTTAATACCAGATGAAGAGTAGATTCTTTCTGAATATTGTAATC--TG 27601924 Query 118572 ATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||| | | ||| || | ||||| ||||| |||| | ||| || ||||| |||| Sbjct 27601925 AGAGTGTTCTTCCATCTTCTAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCAGGAG 27601984 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCG 118688 | || || || |||||| ||| || || || | || | || |||| ||| || Sbjct 27601985 GAATTCCTTCTTTGTCTTGAATCTTAGCCTTTACGTTCTCTATTGTATCCGAAGCT-TCA 27602043 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||| || || |||||||| |||||||||||||| Sbjct 27602044 ACTTCAAGAGTGATAGTTTTCCCAGTAAGAGTTTTGACAAAAATCTGCAT 27602093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433802266234132