Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq1 123 5e-23 seq10 122 2e-22 >seq1 Length=29893408 Score = 123 bits (136), Expect = 5e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 135637 GATCCTGTTTTGCATATAGAACTTAG-GAGATGGGCGGATGTTTTTATTATAGCGCCCTT 135695 |||||||| |||||||| || |||| || |||||| ||| | ||| | || || || || Sbjct 7176175 GATCCTGTATTGCATATTGAT-TTAGTGAAATGGGCCGATTTATTTTTAATTGCTCCATT 7176117 Query 135696 AACGGCAAATACGTTAGCAAAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTAT 135755 | || ||||| | | |||||||||| ||||||||| |||||| || | || | | | Sbjct 7176116 AGATGCTAATACTCTTGGCAAAATAGCTAGTGGTATATGTGATAATATATTAACTTGTGT 7176057 Query 135756 TGTAAGAGCCTGGGATACAAACAAACCACTCATTTTCTGTCCTGCAATGAATACTCTTAT 135815 || | | ||||||||| || || || | | || |||||||| |||||||| || Sbjct 7176056 TGCACGTGCCTGGGATCCATTAAAGCCTTTGGTCTTTTGTCCTGCCATGAATACAAAAAT 7175997 Query 135816 GTGGGAACATCCTATTACAGAAAAACA 135842 ||||||||||||| |||| | || ||| Sbjct 7175996 GTGGGAACATCCTGTTACTGCAACACA 7175970 >seq10 Length=12965953 Score = 122 bits (134), Expect = 2e-22 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 189395 AGAAAGTATATATATTCCATTAAACAACTCGAAAAAGCGGAAACTCATGATCCTCTATGG 189454 ||||| |||||||||| | || || | ||||| | |||||||||||| | | ||| Sbjct 7286556 AGAAAATATATATATTTTTTAAATCATTTGGAAAATTCAGAAACTCATGATGATTTGTGG 7286497 Query 189455 AACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTAT 189514 || || | |||| || ||||| | | |||||| |||||| | |||||| |||||||| Sbjct 7286496 AATGCATGTCAAAATCAAATGGTAACAATAGGAAAGATGCATGGGTTTTTAAGAATGTAT 7286437 Query 189515 TGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAGACGCTTTGAGTTATAGTATC 189574 ||||| ||||| ||| | ||||||||| ||| |||||| ||||| | | | Sbjct 7286436 TGGGCAAAGAAAATATTAGAATGGACTGAAACTCCTGAAATTGCTTTAAAATGGGCCAAT 7286377 Query 189575 TATTTGAACAACAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGTT 189629 ||||| || || ||||| |||| || |||||||| || || ||||||| Sbjct 7286376 TATTTAAATAATAAGTATAGTATAGATGGTTGTGATCCTAATGGTTATGTAGGTT 7286322 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 189624 TAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCGATAT 189683 ||||||||||||||||||| || || | || ||| | ||| ||||||| |||| Sbjct 7286230 TAGGTTGTATGTGGTCTATCTGTGGTGTCCATGATCATGGTTGGCCAGAAAGAGATATAT 7286171 Query 189684 TTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTTGCTGTAT 189743 ||||||| || ||||||||||||||||| | | ||| |||||| | |||||| || Sbjct 7286170 TTGGAAAAATTAGATATATGAATTATGAAGGCTGTAAACGAAAATTTAACATTGCTGAAT 7286111 Query 189744 TT 189745 || Sbjct 7286110 TT 7286109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923135395872840