Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq9 113 5e-20 seq8 113 5e-20 seq50 109 6e-19 seq6 109 6e-19 seq10 96.9 4e-15 seq4 96.9 4e-15 >seq9 Length=11120453 Score = 113 bits (124), Expect = 5e-20 Identities = 80/92 (87%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 1513306 AAAAAAATTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1513247 Query 60117 TCACCACTATACTACCGAGGATTGAATATATA 60148 | ||||||||||||||||||| | |||| || Sbjct 1513246 TGACCACTATACTACCGAGGAATCTATATGTA 1513215 Score = 104 bits (114), Expect = 3e-17 Identities = 74/84 (88%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 60057 AAAAATTT-TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| | ||||| || | ||||||||||||| ||||||||||||||||||||| ||| Sbjct 4449742 AAAAATATATCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 4449683 Query 60116 CTCACCACTATACTACCGAGGATT 60139 || |||||||||||| |||||||| Sbjct 4449682 CTAACCACTATACTAACGAGGATT 4449659 >seq8 Length=13546544 Score = 113 bits (124), Expect = 5e-20 Identities = 76/84 (90%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 60056 GAAAAAT--TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||||||| ||||||| |||| ||||||||||||| ||||||||||||||||||||| | Sbjct 6120325 GAAAAATAATTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 6120266 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||| ||||||||||||||||||| Sbjct 6120265 TACTAACCACTATACTACCGAGGA 6120242 Score = 111 bits (122), Expect = 2e-19 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 ||||||| |||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 8385454 GAAAAATAAACTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 8385513 Query 60116 CTCACCACTATACTACCGAGGATT 60139 || ||||||||||||||||||||| Sbjct 8385514 CTGACCACTATACTACCGAGGATT 8385537 Score = 105 bits (116), Expect = 8e-18 Identities = 73/83 (88%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| ||| ||||| || | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 8384654 AAATATTCTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 8384713 Query 60117 TCACCACTATACTACCGAGGATT 60139 | |||||||||||| |||||||| Sbjct 8384714 TAACCACTATACTAACGAGGATT 8384736 >seq50 Length=137298 Score = 109 bits (120), Expect = 6e-19 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 46725 TTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 46666 Query 60123 CTATACTACCGAGGA 60137 ||||||||||||||| Sbjct 46665 CTATACTACCGAGGA 46651 >seq6 Length=18472937 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| ||||| |||||||| || ||||| ||||| || ||||||||||| ||||| | Sbjct 4826105 TCCACCTCTCAAACGCAATACTAAATGTAATGTTGATTCTTTTTGAATATTATAATCCGA 4826046 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || | || || ||||| |||||||| || || | || |||||| || | || Sbjct 4826045 AAGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGAGG 4825986 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGC-GTCGCCACCGTGTCGCTCGATTCCA 43134 | | |||||| | | ||| |||| |||| | | | | | || ||| | ||| | Sbjct 4825985 AATACCCTCCTTAT-CTTGAATTTTAGTTTTAACATTTTCGATAGTATCGGATGCTTCAA 4825927 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | ||||||||||| || || || ||||| || || |||||||| Sbjct 4825926 CCTCCAAAGTGATGGTTTTTCCGGTAAGAGTCTTAACGAAAATTTGCAT 4825878 Score = 102 bits (112), Expect = 9e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||||| |||||||| || ||||| | ||| || ||||||||||||||||| | Sbjct 4826333 TCCTCCTCGCAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTGTAATCCGA 4826274 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || | || || || || |||||||| || || | || |||||| || | || Sbjct 4826273 AAGTGTACGACCATCTTCCAGTTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGAGG 4826214 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGC-GTCGCCACCGTGTCGCTCGATTCCA 43134 | | |||||| | | ||| |||| |||| | | | | | || ||| | ||| | Sbjct 4826213 GATACCCTCCTTAT-CTTGAATTTTAGTTTTAACATTTTCAATAGTATCGGATGCTTCAA 4826155 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | || | ||||||||||| || || || || || || || ||||||||| Sbjct 4826154 CCTCCAAAGTGATGGTTTTTCCGGTAAGAGTTTTGACGAAAATTTGCATT 4826105 >seq10 Length=12965953 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 ||| |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 12839466 TTTACTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACC 12839407 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 12839406 ACTATACTATCGAGGA 12839391 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 9853460 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 9853401 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 9853400 TACTATCGAGGA 9853389 >seq4 Length=12718334 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 || ||| ||||| || | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 5288505 AATAATGATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 5288446 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||| |||||| Sbjct 5288445 TGACCACTATACTATCGAGGA 5288425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571779566981880