Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq15 118 1e-21 >seq15 Length=10167229 Score = 118 bits (130), Expect = 1e-21 Identities = 153/205 (75%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 16488 TTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 ||||||| |||| ||| || ||||| |||| ||| ||||||||||||||||| || Sbjct 2293296 TTTCTTTTGCATCTGCAATGTATGTATCAATTAACAAAGAATACATTTCTGAATGAACAT 2293355 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AGAG 16606 | ||||| || | ||||||||||| || || | || || | |||||||||||| || Sbjct 2293356 TTTCCATGGCAACTTGAAAACCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGAC 2293415 Query 16607 TAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGC-AAG 16665 | ||| | ||| | | || || ||||| |||||||| |||||||||||| || ||| Sbjct 2293416 T-AAATCGTTCAACAAGATTCTCATTAACAATTCCATCAGAAGCTGCAAAAAATGCTAAG 2293474 Query 16666 -TATGTGTTTAATAAAAtttttttC 16689 ||| | | ||||||| |||||| Sbjct 2293475 ACATGAGAT--ATAAAATGTTTTTC 2293497 Score = 113 bits (124), Expect = 4e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 16285 AAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACC 16344 ||||||||| |||||||| || |||| ||||| | ||| || ||||||||||| ||| Sbjct 2293016 AAATGTAAGTCCTGGCATAAGACCTCTCTTTTTTAACCAGAAAATAGCGGCAAAACTACC 2293075 Query 16345 AGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtt 16404 | |||||| |||||||| ||||| ||||| ||||| | || ||| | || | | Sbjct 2293076 ACTAAAGAAAATACCTTCTACTGCAGCAAAAGCAACTACACGTTCAGGAAAAGTAGCACT 2293135 Query 16405 tttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTC 16464 || | | |||||| ||| ||||||| ||||||| | |||||| || || || Sbjct 2293136 TTCATGATTTATCCAATTTAACGCCCAATGAGCTTTTTTTGCAACACATGGCAAATTTTC 2293195 Query 16465 TATTGCATTAAATAA 16479 || ||||||||||| Sbjct 2293196 AATAGCATTAAATAA 2293210 Score = 96.9 bits (106), Expect = 3e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 |||||||||||| | ||| | ||||||||||| ||||| || |||||||| ||||||| Sbjct 2292496 TTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTCTTACCTTCTAAAGAAATATG 2292555 Query 16003 TTCCATAAAATCAAAAGGATTTT 16025 |||||| |||||||| ||||||| Sbjct 2292556 TTCCATGAAATCAAACGGATTTT 2292578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462481237170600