Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq8 150 1e-31 >seq8 Length=13546544 Score = 150 bits (166), Expect = 1e-31 Identities = 215/298 (72%), Gaps = 5/298 (2%) Strand=Plus/Plus Query 20043 ATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATG 20102 |||||| ||||||||||| ||||| |||||||||||||| || || || || || ||||| Sbjct 1794289 ATTTCCATTATTAACTACAAAACGCGTATTTTGGAAAGGTGTAGTGGAGGAATTGTTATG 1794348 Query 20103 GTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGA-GTTAAGATTTGGA 20161 ||||||||||||||| |||||| | | || || ||||||| ||| | |||||| Sbjct 1794349 GTTTATTAAAGGATCCACAAATGC-AAAGAAATTAAGTGAAAAGGATGTTCATATTTGGG 1794407 Query 20162 GCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAGGGGG 20221 ||| || | || |||| ||| | ||| ||| | | |||| || | Sbjct 1794408 ATGCAAATAGTTCACGTGAATTCTTAGATTCTTGTGGTTTTATAGATAGAGAAGAAGGAG 1794467 Query 20222 ATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGA 20281 |||| |||||| | |||||||||||||||||||||||||| || |||| || ||| Sbjct 1794468 ATTTAGGTCCTATTTATGGATTTCAATGGAGACATTTTGGTGCAACATATAAAGATATGT 1794527 Query 20282 ACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTT-ATTAATTTAATTA 20338 ||| | ||||| |||| ||| ||| | |||| | ||| || | |||||||||| Sbjct 1794528 ACAAAGATTATAATGGAGAAG--GTAAAACAATAATCTAATATTCCTAAATTTAATTA 1794583 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 20347 CCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCT 20406 || || || ||||||||||| | || ||||| | | ||| | || ||||||| Sbjct 1794675 CCCAATGATAGAAGAATTATAATGACAGCATGGAATCCAATTGATATTCCAAAAATGGCT 1794734 Query 20407 TTGCCTCCATGTCATATGCTATG-CCAATTTTACGTTGCTAATAATGAATTGTCGTGTCA 20465 || ||||| |||||| || | | |||||||| || ||| | ||||| || || || Sbjct 1794735 TTACCTCCTTGTCAT-TGTTTCGTTCAATTTTATGTAAGCAATGAAGAATTATCATGCCA 1794793 Query 20466 AATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGC 20525 | | |||||| || || |||||||| || ||||| || || ||||||||| |||| | Sbjct 1794794 ACTTTATCAAAGAAGTGCGGATATGGGTCTTGGTGTACCATTTAATATTGCATCTTATTC 1794853 Query 20526 GCTGCTTACGTATATGATTGCACATGTTACAGATTTAAA 20564 | | | ||||| | |||||| ||||| | || || Sbjct 1794854 TTTATTAATTTATATACTGGCACATATTACAAACTTGAA 1794892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399158113042345