Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq15 114 1e-20 >seq15 Length=10167229 Score = 114 bits (126), Expect = 1e-20 Identities = 137/182 (75%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 14454 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14513 |||| ||||| | | || ||||||||||||||| | || ||||||||| || || | Sbjct 2293294 CCTT-TCTTTTGCATCTGCAATGTATGTATCAATTAACAAAGAATACATTTCTGAATGAA 2293352 Query 14514 TGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-T 14572 |||||||| || | ||||||||||| ||||| | || |||| |||||| || | Sbjct 2293353 CATTTTCCATGGCAACTTGAAAACCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTT 2293412 Query 14573 GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC 14632 || | ||||| ||| | | ||| |||||||| || |||||| ||||||||||||||| Sbjct 2293413 GACT-AAATCGTTCAACAAGATTCTCATTAACAATTCCATCAGAAGCTGCAAAAAATGCT 2293471 Query 14633 AA 14634 || Sbjct 2293472 AA 2293473 Score = 107 bits (118), Expect = 2e-18 Identities = 160/226 (71%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 14006 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGAC 14065 || || | |||||||| ||||| || |||||||| |||| || || ||||||||| || Sbjct 2292661 ACCTTTTTACAACCTAATTCTACAAGCAATCTATCTGCAACAAATTCGATATATTGACAC 2292720 Query 14066 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTT 14125 || | | ||||||||| ||||| | || ||||| | | || || |||||||||| | Sbjct 2292721 ATAAGTTTACAATTCATGCCTATCATTTCAACAGGTAATGCATCTGTCAAAAATTCTTGT 2292780 Query 14126 TCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTT 14185 || || ||||| || || ||||| || | |||| ||| || | || | Sbjct 2292781 TCAATTTTGACAGCATCTTTAATAATTGATGTGACTCGTTCACAAGATGGT---TTTTGT 2292837 Query 14186 AGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 14228 | | ||||| || |||||||| |||||||||||||| | |||| Sbjct 2292838 ACAATGTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 2292883 Score = 105 bits (116), Expect = 6e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 ||||||||||| |||||| || || |||||| | ||||||||| | |||| |||| Sbjct 2292988 CCTCATCTCTAGAAATAAGCTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTCTTTT 2293047 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 ||||||| || || || || || || |||||| || || || ||||||||||| | Sbjct 2293048 TTAACCAGAAAATAGCGGCAAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 2293107 Query 14346 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14405 | | || ||||| ||| | || ||| | |||||| ||| ||||| | || Sbjct 2293108 CAACTACACGTTCAGGAAAAGTAGCACTTTCATGATTTATCCAATTTAACGCCCAATGAG 2293167 Query 14406 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14448 ||||||| || | | || ||||||||||||||||||| Sbjct 2293168 CTTTTTTTGCAACACATGGCAAATTTTCAATAGCATTAAATAA 2293210 Score = 95.1 bits (104), Expect = 1e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 13901 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13960 || || ||| |||||||||||| | ||| |||||||||||||||| || |||||||| Sbjct 2292485 ATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTCTTACCTTCT 2292544 Query 13961 AGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATA 14002 | || |||| |||||| |||||||| |||||| |||||| Sbjct 2292545 AAAGAAATATGTTCCATGAAATCAAACGGATTTTCAGACATA 2292586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482313517988280