Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 1e-15 seq8 91.5 2e-13 seq110 86.0 9e-12 >seq3 Length=13234341 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 19429 AAAAATATATCTAGGACTTGCTGCATCTTTTCCTCCAGAAAGTCTCGTGCCAAATTGGCC 19488 ||||||||||| |||||||||||||||||||||||| | |||||| || |||||||| || Sbjct 13168256 AAAAATATATCGAGGACTTGCTGCATCTTTTCCTCCTGCAAGTCTTGTACCAAATTGACC 13168197 Query 19489 ATCCTCTTCTAAAAGAGGTATGTTATTGGCTCCAACAAAAGTTTGTGCCATTTTAATGAT 19548 | || | | ||| ||||| ||| || ||| ||||||| | ||||| || Sbjct 13168196 AATTGGTTGAAGTAAGTTTATATTATTACTTCCTACGAAATTTTGTGCAAGATTAATAAT 13168137 Query 19549 AG-TGTCAAATAGATTTTGTTCTCCATGTTTATAATCTGTTTTTTGTGCTACGAAAGCTC 19607 || || || | ||| ||||||||| | ||| ||| | || ||||| || | Sbjct 13168136 AGTTGACATA-AGAGAAACTTCTCCATGGTGATATGCTGAATGTTCAGCTACAGAACCAG 13168078 Query 19608 CTAATTGGGCAACTTT 19623 | ||||| |||||||| Sbjct 13168077 CCAATTGTGCAACTTT 13168062 >seq8 Length=13546544 Score = 91.5 bits (100), Expect = 2e-13 Identities = 147/213 (69%), Gaps = 15/213 (7%) Strand=Plus/Plus Query 104530 GATAGAAGAATGATATTATTAGCTTGGAACCCAAAGGATAATTCTAAAATGGCACTTCCT 104589 ||||||||||| ||| | ||| ||||| |||| |||| | | |||||||| | ||| Sbjct 1794681 GATAGAAGAATTATAATGACAGCATGGAATCCAATTGATATTCCAAAAATGGCTTTACCT 1794740 Query 104590 CCTTGTCATTGTATAGCACATTTTGATGTAAGTTCAAAAATAAATGGTAAAAGAGAATTG 104649 |||||||||||| | | || ||| ||||||| |||| |||||| Sbjct 1794741 CCTTGTCATTGTTTCGTTCAATTTTATGTAAG---------CAATG------AAGAATTA 1794785 Query 104650 TCTTGTCATTTATTTCAAAGATCTGCAGATATGGGGTTGGGAGTTCCTTTTAACATAGCA 104709 || || || | | ||||||| ||| |||||||| | || || || ||||| || ||| Sbjct 1794786 TCATGCCAACTTTATCAAAGAAGTGCGGATATGGGTCTTGGTGTACCATTTAATATTGCA 1794845 Query 104710 AGTTATGCATTATTAACACATATAATAGCTCAT 104742 |||| | ||||||| ||||| | || ||| Sbjct 1794846 TCTTATTCTTTATTAATTTATATACTGGCACAT 1794878 >seq110 Length=147519 Score = 86.0 bits (94), Expect = 9e-12 Identities = 125/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 73383 AAAGGTTTAAGAGAAAGATTAACTGGAAAAGAAGGTCAAATAAGAAACAATTTATTAGGT 73442 |||| | ||| || |||||||| |||||||||||| |||| || ||||| | ||| Sbjct 59323 AAAGCTATAAAAGCAAGATTAAAAGGAAAAGAAGGTAGAATACGAGGAAATTTGATGGGT 59264 Query 73443 AAAAGGTGT-GAAATGTCTGCTAGAACTGTTATAGGACCAGATCCAACACTAAAAATTGA 73501 ||| |||| || | |||||| | |||||||| || ||||| | || ||| || Sbjct 59263 -AAACGTGTCGATTTTTCTGCTCGTACTGTTATTACTCCTGATCCTAATTTACGAATCGA 59205 Query 73502 TGAAGTAATTGTTCCAAAAGAAATTGCTCAATCTTTAACTTTTCCTGACTTTGT 73555 | ||||| ||| || | | ||||||||| |||||| |||||||| |||| Sbjct 59204 TCAAGTAGGTGTACCTAGAAGCATTGCTCAAAATTTAACATTTCCTGAAATTGT 59151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679769183844720