Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq6 102 6e-17 >seq6 Length=18472937 Score = 102 bits (112), Expect = 6e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 |||||||| |||||||||||||| ||||| |||| | || || |||||||| |||| Sbjct 4825168 TGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCATCTTCCAGTTGT 4825109 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| |||| | ||| |||||||| || | ||||| ||||| ||||| | Sbjct 4825108 TTACCGGCAAAGATTAATCTCTGTTGATCAGGAGGAATACCTTCTTTATCCTGAATTT-T 4825050 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || || || | | ||| ||| || | || ||| | || || |||| || || Sbjct 4825049 GGCTTTAACATTTTCAATAGTATCTGAAGCTTCAACTTCTAAAGTAATAGTTTTTCCAGT 4824990 Query 18302 CAATGTTTTTACAAAAATTTGCATT 18326 | |||||| ||||||||||||||| Sbjct 4824989 GAGTGTTTTGACAAAAATTTGCATT 4824965 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | |||||| | |||||| || |||||||||||||| || || |||| Sbjct 4826788 CCACCTCGGAGACGAAGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAATCGGAA 4826729 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || |||||||| ||||| || ||| | || | ||| |||||||| || Sbjct 4826728 AGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTCTGTTGATCAGGAGGA 4826669 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTG-ACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || ||||| |||||| || | | ||| |||||| | || Sbjct 4826668 ATACCTTCTTTGTCTTGAATTT-TTGCTTTTACATTTTCAATTGTGTCAGAAGCTTCAAC 4826610 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || || |||| || || | || || |||||||||||||| Sbjct 4826609 TTCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGACAAAAATTTGCAT 4826562 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 |||||||| |||||||||||||| ||||| |||| | || || |||||||| ||| Sbjct 4824940 TGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCATCTTCCAGCTGT 4824881 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| |||| | ||| |||||||| || | ||||| ||||| ||||| | Sbjct 4824880 TTACCGGCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTATCCTGAATTT-T 4824822 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || || || | | ||| ||| || | || ||| | || || |||| || || Sbjct 4824821 AGCTTTAACATTTTCAATAGTATCTGAAGCTTCAACTTCTAAAGTAATAGTTTTTCCAGT 4824762 Query 18302 CAATGTTTTTACAAAAATTTGCATT 18326 | |||||| ||||||||||||||| Sbjct 4824761 GAGTGTTTTGACAAAAATTTGCATT 4824737 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || |||||||||||||||||||| ||||| || | | ||| || |||||||| |||| Sbjct 4826308 TGTAGTGTTGATTCTTTTTGAATATTGTAATCCGAAAGTGTACGACCATCTTCCAGTTGT 4826249 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTT-- 18240 || || ||| | || | ||| || ||||| || | || |||||||| ||||| Sbjct 4826248 TTACCAGCAAAAATCAATCTCTGCTGATCTGGAGGGATACCCTCCTTATCTTGAATTTTA 4826189 Query 18241 GTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGG 18300 ||| || || | | ||| ||| || | || || | |||||| |||| |||| Sbjct 4826188 GTT--TTAACATTTTCAATAGTATCGGATGCTTCAACCTCCAAAGTGATGGTTTTTCCGG 4826131 Query 18301 TCAATGTTTTTACAAAAATTTGCATT 18326 | | ||||| || |||||||||||| Sbjct 4826130 TAAGAGTTTTGACGAAAATTTGCATT 4826105 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||| | || |||||||| ||||||||||| || || || | | ||| | |||| Sbjct 4824721 AGTACTAAATGTAGTGTTGACTCTTTTTGAATATTATAATCAGATAATGTACGCCCATCT 4824662 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || |||||||| || ||| |||| | |||||| ||||| || | |||||||| || Sbjct 4824661 TCTAATTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCT 4824602 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| | || || || | | ||| || || || ||| || | || || | Sbjct 4824601 TGAATTT-TCGCTTTTACATTTTCAATGGTATCTGAGGCCTCAACCTCCAGAGTTATTGT 4824543 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| || ||||||||||| ||||| || ||||| Sbjct 4824542 TTTACCTGTCAATGTTTTGACAAAGATCTGCAT 4824510 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||| || || | |||||||| |||||||||||||| ||||| |||| Sbjct 4825876 CCACCACGAAGTCGTAGAACGAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAA 4825817 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| |||||||| || ||| |||| | ||||||||| || || Sbjct 4825816 AGAGTACGACCATCTTCTAATTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCAGGAGGA 4825757 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || ||| | | || || || | | ||| ||| ||| | || Sbjct 4825756 ATACCTTCTTTGTCTTGAATCT-TAGCTTTTACATTTTCAATAGTATCAGAAGCTTCTAC 4825698 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || || | || || || | ||||| || ||||||||||| Sbjct 4825697 TTCAAGAGTAATAGTCTTTCCTGTAAGGGTTTTGACGAAAATTTGCAT 4825650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379319399660145