Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 8e-16 seq4 84.2 2e-11 seq6 82.4 6e-11 >seq1 Length=29893408 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| |||||||| || ||||| || ||||| || ||| | || || ||| | Sbjct 27605433 ATGCAGATCTTTGTTAAGACTTTAACAGGAAAAACCATCACCTTAGAAGTTGAAGCTTCA 27605374 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| |||| | ||| |||| || ||| | |||||||| | || || || Sbjct 27605373 GACACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCAGATCAA 27605314 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGAT--TCCATGACTATGAACGATTACA 25009 ||||||||||| | ||| ||||||||||| |||||| | | ||| | | ||||| | Sbjct 27605313 CAACGTTTAATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTTTCA--GATTATA 27605256 Query 25010 GCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || || || || | || |||||||||||||| || | | |||||| Sbjct 27605255 ATATCCAAAAGGAATCTACACTTCATTTAGTGTTGAGACTTAGAGGAGGT 27605206 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || ||||| ||||| | || || ||||| || ||| | || || ||| | Sbjct 27604749 ATGCAAATCTTTGTCAAAACTCTCACTGGTAAAACCATTACCTTAGAAGTTGAAGCTTCA 27604690 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | |||| | |||||| | || ||| | |||||||| | || ||| || Sbjct 27604689 GATACAATAGAGAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAA 27604630 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||||||||||| | ||| || |||||| | |||||| | ||| | ||||| | | Sbjct 27604629 CAACGTTTAATCTTTGCTGGTAAACAATTAGAAGATGGAAGAACTCTTTCAGATTATAAC 27604570 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTT 25043 || |||||||| |||| ||||| |||||||| Sbjct 27604569 ATTCAGAAAGAATCCACACTTCACTTAGTGTT 27604538 >seq4 Length=12718334 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||||||||| ||||| || || || ||||| || || | || || ||| | Sbjct 12038672 ATGCAGATATTTGTGAAAACTTTGACGGGTAAAACTATCACTCTTGAAGTAGAAGCATCA 12038613 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | |||||| ||| || | |||||| | |||||||| |||| ||| ||| Sbjct 12038612 GATACTATAGAAAATGTGAAAGCTAAAATTCAGGATAAAGAAGGAATACCACCTGATCAG 12038553 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGAT 24987 |||||| | || | ||| || || ||| |||||||| Sbjct 12038552 CAACGTCTTATTTTTGCTGGAAAGCAATTGGAAGAT 12038517 >seq6 Length=18472937 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || ||||| ||||| | || || ||||| || || | || || ||| | Sbjct 4824966 ATGCAAATTTTTGTCAAAACACTCACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTCA 4825025 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | | |||| |||||| | |||||| | |||||||| | || ||| || Sbjct 4825026 GATACTATTGAAAATGTTAAAGCCAAAATTCAGGATAAAGAAGGTATTCCTCCTGATCAA 4825085 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || | ||||| | ||| || ||||||||||||||| ||| | |||||||| Sbjct 4825086 CAGAGATTAATCTTTGCCGGTAAACAACTGGAAGATGGTCGTACTCTTTCCGATTACAAT 4825145 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || || ||||| | || |||||| | || || ||| | ||||| ||| Sbjct 4825146 ATTCAAAAAGAATCTACACTTCATCTTGTTTTGCGACTTCGCGGTGGT 4825193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418276873116320