Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq8 96.9 7e-15 seq15 86.0 1e-11 >seq8 Length=13546544 Score = 96.9 bits (106), Expect = 7e-15 Identities = 129/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 35529 ATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTC 35588 |||||||||| || || ||||| ||||||||||| || ||| ||| |||||| | | Sbjct 1794679 ATGATAGAAGAATTATAATGACAGCATGGAATCCAATTGATATTCCAAAAATGGCTTTAC 1794738 Query 35589 CTCCATGCCACATGACT-GCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTG 35647 |||| || || || | | |||||||||||| |||| |||||| || ||||| | Sbjct 1794739 CTCCTTGTCA-TTGTTTCGTTCAATTTTATGTAAGCAATGAAGAATTATCATGCCAACTT 1794797 Query 35648 TATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACTCT 35704 ||||| |||| | ||| | || | || || || || ||||||||||| || ||| Sbjct 1794798 TATCAAAGAAGTGCGGATATGGGTCTTGGTGTACCATTTAATATTGCATCTTATTCT 1794854 >seq15 Length=10167229 Score = 86.0 bits (94), Expect = 1e-11 Identities = 96/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||| ||||||||||| ||||| || |||||||||||| || || | ||||||||| Sbjct 2293111 GTTGCTTTTGCTGCAGTAGAAGGTATTTTCTTTAGTGGTAGTTTTGCCGCTATTTTCTGG 2293052 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | || || || ||| || |||| || || || | ||||||| | |||||||| || Sbjct 2293051 TTAAAAAAGAGAGGTCTTATGCCAGGACTTACATTTAGCAATGAGCTTATTTCTAGAGAT 2292992 Query 102038 GAAGGTC 102044 | ||||| Sbjct 2292991 G-AGGTC 2292986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989516534801555