Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq15 147 3e-30 seq6 136 5e-27 seq11 89.7 6e-13 >seq15 Length=10167229 Score = 147 bits (162), Expect = 3e-30 Identities = 159/208 (76%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 || ||||| || || | | ||||||||| ||||||| ||||| ||||| | ||||| Sbjct 2293316 TATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAA 2293375 Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTT 33971 || |||||||| | ||||| || || || |||||| || ||||||||| | | ||| Sbjct 2293376 CCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGATTC 2293435 Query 33972 TCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 34031 ||||| || ||||||||| ||||||||||| || || ||||| |||||||| |||| Sbjct 2293436 TCATTAACAATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATATAAAATGTTTT 2293495 Query 34032 TCGTCTGG-TGTTAGTTTATTCCAATCA 34058 || |||| |||| |||||||||||| Sbjct 2293496 TC-ACTGGCAGTTAAATTATTCCAATCA 2293522 Score = 104 bits (114), Expect = 3e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 34066 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 34125 ||||||| | |||||||||||| ||||||||||| ||||| || || ||||||||||| | Sbjct 2293605 CTTTAGAAAGATCCACTTCTTCTACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTT 2293664 Query 34126 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 ||| || ||| | | || || || |||| |||||||||| ||||||| Sbjct 2293665 GCCAAATATCAGGCCACTGAATAGGAAAAACAACAAATCTACGTGGATTT 2293714 Score = 96.9 bits (106), Expect = 4e-15 Identities = 156/223 (70%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 33387 TTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATC 33446 |||||| | || ||||| || |||||||||||| || ||||| |||||| ||| Sbjct 2292664 TTTTTACAACCTAATTCTACAAGCAATCTATCTGCAACAAATTCGATATATTGACACATA 2292723 Query 33447 ATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCA 33506 | || ||||||||| ||||| | || ||| || | || | || | ||||||||||||| Sbjct 2292724 AGTTTACAATTCATGCCTATCATTTCAACAGGTAATGCATCTGTCAAAAATTCTTGTTCA 2292783 Query 33507 ATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGG---ATGTAAT 33563 || || |||| | | ||||| || | || | ||||| | ||| |||| Sbjct 2292784 ATTTTGACAGCATCTTTAATAATTGATGTGAC---TCGTTCACAAGATGGTTTTTGTACA 2292840 Query 33564 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 33606 | ||||| ||||| |||||||| ||||| || || | |||| Sbjct 2292841 ATGTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 2292883 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 ||| |||||| |||||| ||||| ||||| |||||| || || || || || ||||| Sbjct 2292484 CATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTCTTACCTTC 2292543 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATT 33370 || || |||| ||||||||||||||||||||| Sbjct 2292544 TAAAGAAATATGTTCCATGAAATCAAACGGATT 2292576 >seq6 Length=18472937 Score = 136 bits (150), Expect = 5e-27 Identities = 164/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 62295 TGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 62354 || || || ||| || | | ||||| ||| || || || |||| ||| | | ||| Sbjct 6969919 TGTATAGAGCCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTCTT 6969860 Query 62355 TCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTC 62414 || |||||| ||| | | ||| || || || ||||| || ||||| || | ||||| Sbjct 6969859 TCAGTTAAATCTCGCAATAAATGAGGATTTACAACTTGAAACTCTCCTGATAGAACTCTT 6969800 Query 62415 CGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCA 62474 | ||||||||||| ||||| || ||||| | || ||||||||||| |||||||| || Sbjct 6969799 CTTGTGTAAATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGCT 6969740 Query 62475 GTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 62517 |||||||| || ||||||||||| | || ||| |||||||| Sbjct 6969739 GTTGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAA 6969697 Score = 132 bits (146), Expect = 6e-26 Identities = 266/391 (68%), Gaps = 14/391 (4%) Strand=Plus/Minus Query 62788 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62847 |||| |||||||||||||| ||| || || ||||||||||| ||||||||||| | Sbjct 6969272 TACCTATAGGTCTATGTCTAAAATTTGATTTTCTTGCTTCTGGAATGGGATAATAATTGA 6969213 Query 62848 TATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 62904 ||| |||||||| | ||||| | | |||||| |||| || | | ||||| Sbjct 6969212 CATCGATAATTTTGTCCAGATTACAAGTAACAATT--TTTG-TTACTTTCAGAAGTTTTT 6969156 Query 62905 GAAAATCAAATCGCCCATCTA------TTACAAACATGTTCAATGCAACAGATGCCAGAT 62958 ||||||||||| || | |||||||||| || | |||| || || | || Sbjct 6969155 GAAAATCAAATGTTTGATTAATGGGATTTACAAACATATTAACAGCAATTGAAGCTAAAT 6969096 Query 62959 TACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 63018 ||||||| || || |||| | | | ||| || | | || || || | |||||||| Sbjct 6969095 TACACACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTAC 6969036 Query 63019 ACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 63078 ||| || ||||||| |||||| ||||| || || || ||| |||||||| | Sbjct 6969035 TCTTTATTGTTCCTATATTTTGATGATTTGATTTGCGATTGCAGTGATCTTTATAAAGCA 6968976 Query 63079 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 63138 | ||||||| || ||||||| ||||| | ||| ||| |||| | ||| ||| | Sbjct 6968975 TATATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTAGCTT 6968916 Query 63139 TTATTATAGATTTGTATCTCCTTTCTCTTTC 63169 ||| ||| ||||| |||||| ||| Sbjct 6968915 GAATTTGTCGTTTATATCT--TTTCTCATTC 6968887 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 ||| || || | |||||||||| |||| | |||| |||||| |||||||| || | Sbjct 6968614 TTCAAATTCATTGCCCCAAACATCAGCCAAACCAGGAGATTCATGTGGACACATTAAAGT 6968555 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63306 ||| | | |||| |||||||||||||| |||||||| ||||| | ||| ||| | Sbjct 6968554 CCATATATCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCCATAAAGC-ATAGA 6968496 Query 63307 ATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 ||| ||||||| ||||| ||| || || ||||| Sbjct 6968495 ATAATTCTCTTGCTCTATTTTCTTCTTTACCTGT 6968462 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 62622 CCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCA 62681 ||| |||| || ||||||| |||| | ||||| |||| ||| || || || || ||| Sbjct 6969507 CCTTCATAAGTTTCATATGTACCTTTTTCTTCAGCAAGTTCACAGCTGGCTTCCAAAGCA 6969448 Query 62682 CCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAAT 62741 || ||||| | |||||||| || | |||| || | ||||||||| || |||||| Sbjct 6969447 CCATAATATAGTGTTTCAAATATTTGAATATTAAGTTTTTGTGCTTCTTCACTTTCAAAT 6969388 Query 62742 GGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACC 62791 |||||| | | || ||| || || || | ||||||| |||||||| Sbjct 6969387 GGATAACGCATTAAAAGAAATGCATCTGCAAGACCTTGAATTCCAATACC 6969338 >seq11 Length=14726556 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 155304 GGCGTTTAAAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGT 155363 |||| | || |||| |||| |||||| | || ||||| || |||||||| ||| | || Sbjct 14208142 GGCGATGAAGAAATGTCCAAATGGAATGCTGGCCGAAGTGAAGTACGATGGAGAACGCGT 14208201 Query 155364 ACAAGTTCATaaaaaaaaTAACGAGTTTGCATTCTTTAGTAGAAACATGAAACCAGTACT 155423 ||||| || || ||| ||||| ||| || |||||| ||| |||||||||| || Sbjct 14208202 TCAAGTGCACAAGAAAGGGAACGAATTTCGATACTTTAGCAGATCTTTGAAACCAGTGCT 14208261 Query 155424 CTCTCATAAAGT 155435 ||||||||||| Sbjct 14208262 TTCTCATAAAGT 14208273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629775709256880