Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq6 196 5e-45 seq15 163 3e-35 >seq6 Length=18472937 Score = 196 bits (216), Expect = 5e-45 Identities = 231/311 (74%), Gaps = 4/311 (1%) Strand=Plus/Minus Query 37044 TTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCT 37103 ||| ||||| ||||||| | | |||| ||| || || || | || ||| | || ||| Sbjct 6969920 TTGTATAGAGCCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTCT 6969861 Query 37104 ACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCT 37163 ||| |||| ||||| || ||||||||||| ||||| ||||| |||| ||||| Sbjct 6969860 TTCAGTTAAATCTCGCAATAAATGAGGATTTACAACTTGAAACTCTCCTGATAGAACTCT 6969801 Query 37164 TCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGA 37223 |||||| || |||||||| || |||||||| || || |||||||| | ||| ||||| | Sbjct 6969800 TCTTGTGTAAATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGC 6969741 Query 37224 TGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAAT 37283 ||| ||||| || ||||| ||||| |||| | |||||| | ||||||| || ||| Sbjct 6969740 TGTTGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCCATGTTTAGCAAT 6969681 Query 37284 TCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCA 37341 | | ||||| | | ||||||||||||||| ||||| | | || |||||||||| Sbjct 6969680 TTTTTTTTTCAAAATAGTCCAATCCCATAAATTAGTTGGAATAACATT--CCACATATCA 6969623 Query 37342 TATTGTAGAAT 37352 ||||||| ||| Sbjct 6969622 TATTGTAAAAT 6969612 Score = 107 bits (118), Expect = 2e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 36857 CCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATAT 36916 ||| | ||||||| ||||||||||| || |||||| | ||| || || | |||| Sbjct 6970196 CCATTTTCCATCCATAAAAATGCATTGAAGTAAGTTTTTCTGTTGTTGGTTTTGCCATAT 6970137 Query 36917 ATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAA 36976 | | | |||||| |||||||||||| ||||| | || |||||||||| ||||| Sbjct 6970136 GAACATTTAATGATTGTGATTGATCTATAAATGCACCACGATCTGCTGCCATTTTTAAAA 6970077 Query 36977 TACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTA 37033 | |||||| | ||| |||||||| |||||||| | ||||| || |||||||| Sbjct 6970076 TTATTTTTTGTGGTATTTCCCAAACTGTTTTATAAAGCATTTTTAAATCATCTGGTA 6970020 Score = 105 bits (116), Expect = 6e-18 Identities = 244/365 (67%), Gaps = 16/365 (4%) Strand=Plus/Minus Query 37538 TACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGA 37597 ||||||| ||||||||| | ||| ||| | | |||| | ||||||||||||| Sbjct 6969272 TACCTATAGGTCTATGTCTAAAATTTGATTTTCTTGCTTCTGGAATGGGATAATAATTGA 6969213 Query 37598 TATCTATTATTTTATTTAGATTTTTAACTAGT----ATTTTCGTAATTATTCTCAACTTG 37653 ||| || ||||| | ||||| || ||| ||||| || | | ||| || || Sbjct 6969212 CATCGATAATTTTGTCCAGATT----ACAAGTAACAATTTTTGTTACT-TTCAGAAGTTT 6969158 Query 37654 TCGAACAT-AAATACGTTATT------ATTAACAAATTTACTCAACGAAATAGATCCTAG 37706 | ||| || |||| | ||| ||| ||||| || | | | ||| || ||| Sbjct 6969157 TTGAAAATCAAATGTTTGATTAATGGGATTTACAAACATATTAACAGCAATTGAAGCTAA 6969098 Query 37707 ATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACT 37766 |||||| ||||||||||||||| | | | || | || |||||||| | |||||| Sbjct 6969097 ATTACACACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACT 6969038 Query 37767 CGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAG 37826 | |||||||| | ||| ||||| ||||| ||| || ||||||||| || Sbjct 6969037 ACTCTTTATTGTTCCTATATTTTGATGATTTGATTTGCGATTGCAGTGATCTTTATAAAG 6968978 Query 37827 TATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGC 37886 ||||| || |||||| ||| | ||||| | ||||| | |||||||| ||| || Sbjct 6968977 CATATATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTAGC 6968918 Query 37887 TTTAA 37891 || || Sbjct 6968917 TTGAA 6968913 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/163 (72%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 37926 TATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGG 37985 |||| | ||||| ||| ||||| ||||| ||||| || || ||| |||| ||| Sbjct 6968624 TATAGAGAATTTC--AAATTCATTGCCCCAAACATCAGCCAAACCAGGAGATTCATGTGG 6968567 Query 37986 ACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCA 38045 |||||||| || |||| |||| | || |||| |||||| | |||||||| ||| Sbjct 6968566 ACACATTAAAGTCCATATATCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCCA 6968507 Query 38046 TAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCT 38088 ||| ||| ||||| ||| | | ||||| |||||| || ||| Sbjct 6968506 TAAAGCATAGAATAATTCTCTTGCTCTATTTTCTTCTTTACCT 6968464 >seq15 Length=10167229 Score = 163 bits (180), Expect = 3e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 |||||||| ||||| ||| ||||||||||||||||| ||||||||| || | |||||| Sbjct 2293316 TATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAA 2293375 Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTC 12019 ||||||||||| |||||||||| ||||| || | ||||| ||| | | |||| Sbjct 2293376 CCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGATTC 2293435 Query 12020 TCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTT 12079 ||||| ||||| |||||| || |||||||||||||| | ||| |||||| | |||| Sbjct 2293436 TCATTAACAATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATATAAAATGTTTT 2293495 Query 12080 TCGTCTTTAGTTAATTTATCCCAATCATCTAAATC 12114 || |||||| |||| ||||||| || ||| Sbjct 2293496 TCACTGGCAGTTAAATTATTCCAATCAAATACATC 2293530 Score = 132 bits (146), Expect = 5e-26 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 11432 ACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGAC 11491 || |||| ||||||||| ||| | ||||||||||| || ||||| ||||| ||| || Sbjct 2292661 ACCTTTTTACAACCTAATTCTACAAGCAATCTATCTGCAACAAATTCGATATATTGACAC 2292720 Query 11492 ATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTT 11551 || | ||||||||| ||||| | || || || | ||| |||||||||| || | | Sbjct 2292721 ATAAGTTTACAATTCATGCCTATCATTTCAACAGGTAATGCATCTGTCAAAAATTCTTGT 2292780 Query 11552 TCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAAT 11611 || || || || ||||| | || || || || | ||| ||||||| |||| Sbjct 2292781 TCAATTTTGACAGCATCTTTAATAATTGATGTGACTCGTTCACAAGATGGTTTTTGTACA 2292840 Query 11612 AAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACC 11652 | ||||| ||||||||||| ||||||||||||||||| || Sbjct 2292841 ATGTGTTTGAACATTAAACATGCAAAATCACAATGTAATCC 2292881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468493637244240