Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq15 161 1e-34 seq6 154 2e-32 >seq15 Length=10167229 Score = 161 bits (178), Expect = 1e-34 Identities = 160/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 36428 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 36487 ||||||||||| || | | ||||||||| ||||||| ||||| ||||| | |||||| Sbjct 2293316 TATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAA 2293375 Query 36488 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTT 36547 || |||||||| | ||||| || || ||||||||| || ||||||||| | | ||| Sbjct 2293376 CCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGATTC 2293435 Query 36548 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 36607 ||||| || ||||| ||| ||||||||||| || || ||||| |||||||| |||| Sbjct 2293436 TCATTAACAATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATATAAAATGTTTT 2293495 Query 36608 TCGTTTGGTGTTAGTTTATTCCAATCA 36634 || | | |||| |||||||||||| Sbjct 2293496 TCACTGGCAGTTAAATTATTCCAATCA 2293522 Score = 116 bits (128), Expect = 5e-21 Identities = 167/234 (71%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 35954 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATAT 36013 ||| ||| |||||| | || ||||| || |||||||||||| |||||||| |||||| Sbjct 2292655 TTACAAACCTTTTTACAACCTAATTCTACAAGCAATCTATCTGCAACAAATTCGATATAT 2292714 Query 36014 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAAT 36073 ||| | || ||||||||| ||||| | || ||| || | || | || | |||| Sbjct 2292715 TGACACATAAGTTTACAATTCATGCCTATCATTTCAACAGGTAATGCATCTGTCAAAAAT 2292774 Query 36074 TCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGG- 36132 ||||||||||| ||| || ||| | ||||| ||| | || | ||||| | ||| Sbjct 2292775 TCTTGTTCAATTTTGACAGCATCTTTAATAATTGATGTGAC---TCGTTCACAAGATGGT 2292831 Query 36133 ----ATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCT 36182 |||||| ||||| ||||| |||||||| ||||| || |||| |||| Sbjct 2292832 TTTTGTACAAT--GTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 2292883 Score = 111 bits (122), Expect = 2e-19 Identities = 91/111 (82%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 36642 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 36701 ||||||| | |||||||||||| ||||||||||| ||||| || || ||||||||||| | Sbjct 2293605 CTTTAGAAAGATCCACTTCTTCTACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTT 2293664 Query 36702 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTTT 36752 ||| || ||| | | ||||| ||||||| |||||||||| | |||||| Sbjct 2293665 GCCAAATATCAGGCCACTGAATAGGAAAAACAACAAATCTACGTGGATTTT 2293715 Score = 98.7 bits (108), Expect = 1e-15 Identities = 154/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||| ||| | || ||| ||| || ||||| ||||| || || | ||||| Sbjct 2292988 CCTCATCTCTAGAAATAAGCTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTCTTTT 2293047 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | ||| || || | ||||| ||| ||||||||| ||||||||||| ||||| | Sbjct 2293048 TTAACCAGAAAATAGCGGCAAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 2293107 Query 36300 CAATAAGTCTCTCTCCATAACCGGCACTGTCATG---TATCCACTTTTGAGCCCAATCGG 36356 ||| | | || | || ||||| ||||| |||||| ||| ||||||| | Sbjct 2293108 CAACTACACGTTCAGGAAAAGTAGCACTTTCATGATTTATCCAATTTAACGCCCAATGAG 2293167 Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 36396 | || ||| ||||| |||| | || ||||||||||| Sbjct 2293168 CTTTTTTTGCAACACATGGCAAATTTTCAATAGCATTAAA 2293207 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 35854 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 35913 ||| |||||| |||||| ||||| ||||| |||||| || || || || |||||||| Sbjct 2292484 CATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTCTTACCTTC 2292543 Query 35914 TAATGATATATTTTCCATGAAATCGAATGGATT 35946 ||| || |||| |||||||||||| || ||||| Sbjct 2292544 TAAAGAAATATGTTCCATGAAATCAAACGGATT 2292576 >seq6 Length=18472937 Score = 154 bits (170), Expect = 2e-32 Identities = 168/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 65088 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 65147 || || || ||| || ||| ||||| ||| || || || |||| ||| | | ||| Sbjct 6969919 TGTATAGAGCCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTCTT 6969860 Query 65148 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 65207 || |||||| ||| | | ||| ||||| || |||||||| ||||| || | ||||| Sbjct 6969859 TCAGTTAAATCTCGCAATAAATGAGGATTTACAACTTGAAACTCTCCTGATAGAACTCTT 6969800 Query 65208 CGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCA 65267 | ||||||||||| ||||| || ||||| | ||| ||||||||||| |||||||| || Sbjct 6969799 CTTGTGTAAATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGCT 6969740 Query 65268 GTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 65310 |||||||| || ||||||||||| | || ||| |||||||| Sbjct 6969739 GTTGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAA 6969697 Score = 132 bits (146), Expect = 6e-26 Identities = 266/391 (68%), Gaps = 14/391 (4%) Strand=Plus/Minus Query 65581 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 65640 |||| |||||||||||||| ||| || || ||||||||||| ||||||||||| | Sbjct 6969272 TACCTATAGGTCTATGTCTAAAATTTGATTTTCTTGCTTCTGGAATGGGATAATAATTGA 6969213 Query 65641 TATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 65697 ||| |||||||| | ||||| | | |||||| |||| || | | ||||| Sbjct 6969212 CATCGATAATTTTGTCCAGATTACAAGTAACAATT--TTTG-TTACTTTCAGAAGTTTTT 6969156 Query 65698 GAAAATCAAATCGCTCATCTA------TTACAAACATGTTCAATGCAACAGATGCCAGAT 65751 ||||||||||| | || | |||||||||| || | |||| || || | || Sbjct 6969155 GAAAATCAAATGTTTGATTAATGGGATTTACAAACATATTAACAGCAATTGAAGCTAAAT 6969096 Query 65752 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 65811 |||| || || || |||| | | | ||| || | | || || || | |||||||| Sbjct 6969095 TACACACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTAC 6969036 Query 65812 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 65871 ||| || ||||||| |||||| ||||| || || || ||| |||||||| | Sbjct 6969035 TCTTTATTGTTCCTATATTTTGATGATTTGATTTGCGATTGCAGTGATCTTTATAAAGCA 6968976 Query 65872 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 65931 | ||||||| || ||||||| ||||| | ||| ||| |||| | ||| ||| | Sbjct 6968975 TATATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTAGCTT 6968916 Query 65932 TTATTATAGATTTGTATCTCTTTTCTCTTTC 65962 || | | | ||| ||||||||| ||| Sbjct 6968915 GAAT--TTGTCGTTTATATCTTTTCTCATTC 6968887 Score = 100 bits (110), Expect = 4e-16 Identities = 124/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 65968 GTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 66027 ||||||| | ||| || || | |||||||||| |||| |||||| |||||| | Sbjct 6968627 GTGTATAGAGAATTTCAAATTCATTGCCCCAAACATCAGCCAAACCAGGAGATTCATGTG 6968568 Query 66028 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 66087 ||||||| || | ||| | | |||| |||||||||||||| |||||||| |||| Sbjct 6968567 GACACATTAAAGTCCATATATCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCC 6968508 Query 66088 AAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGT 66133 | | ||| ||| ||||| ||||| | ||||| ||| || || ||||| Sbjct 6968507 ATAAAGC-ATAGAATAATTCTCTTGCTCTATTTTCTTCTTTACCTGT 6968462 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 65415 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 65474 ||| |||| || || |||| |||| | ||||| |||||||| || || || || ||| Sbjct 6969507 CCTTCATAAGTTTCATATGTACCTTTTTCTTCAGCAAGTTCACAGCTGGCTTCCAAAGCA 6969448 Query 65475 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 65534 || ||||| | ||||| || || | |||| || | ||||||||| || |||||| Sbjct 6969447 CCATAATATAGTGTTTCAAATATTTGAATATTAAGTTTTTGTGCTTCTTCACTTTCAAAT 6969388 Query 65535 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 65584 |||||| | | || ||| || ||||| | ||||||| |||||||| Sbjct 6969387 GGATAACGCATTAAAAGAAATGCATCTGCAAGACCTTGAATTCCAATACC 6969338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658129023281640