Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq6 188 1e-42 seq15 158 2e-33 >seq6 Length=18472937 Score = 188 bits (208), Expect = 1e-42 Identities = 229/310 (74%), Gaps = 4/310 (1%) Strand=Plus/Minus Query 78967 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTC 79026 || || || ||| || ||| ||||| ||| || || || |||| ||| | | ||| Sbjct 6969919 TGTATAGAGCCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTCTT 6969860 Query 79027 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 79086 || |||||| ||| | | ||| ||||| || |||||||| ||||| || | ||||| Sbjct 6969859 TCAGTTAAATCTCGCAATAAATGAGGATTTACAACTTGAAACTCTCCTGATAGAACTCTT 6969800 Query 79087 CGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCA 79146 | ||||||||||| ||||| |||||||| | |||||||||||||| |||||||| || Sbjct 6969799 CTTGTGTAAATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGCT 6969740 Query 79147 GTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTG--A 79204 |||||||| |||||||||||||| | || ||| |||||||| || ||| | | | Sbjct 6969739 GTTGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCC--ATGTTTAGCAA 6969682 Query 79205 TTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCAT 79264 |||| | ||| | | ||||||||| | || || || | ||||||||| | ||||| Sbjct 6969681 TTTTTTTTTTCAAAATAGTCCAATCCCATAAATTAGTTGGAATAACATTCCACATATCAT 6969622 Query 79265 ATTGTAGAAT 79274 |||||| ||| Sbjct 6969621 ATTGTAAAAT 6969612 Score = 123 bits (136), Expect = 4e-23 Identities = 264/391 (68%), Gaps = 14/391 (4%) Strand=Plus/Minus Query 79460 TACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 79519 |||| |||||||||||||| ||| || || ||||||||||| ||||||||||| | Sbjct 6969272 TACCTATAGGTCTATGTCTAAAATTTGATTTTCTTGCTTCTGGAATGGGATAATAATTGA 6969213 Query 79520 TATCTATAATTTTATTGAGATTCC---TGACTATTACTTTGACCACATCCTTTAGTTTGA 79576 ||| |||||||| | ||||| | | || ||| |||| || | | ||||| Sbjct 6969212 CATCGATAATTTTGTCCAGATTACAAGTAACAATT--TTTG-TTACTTTCAGAAGTTTTT 6969156 Query 79577 GAAAATCAAATCGTCCATCTA------TTACAAACATGTTCAACGCGACAGATGCCAGAT 79630 ||||||||||| | || | |||||||||| || | || | || || | || Sbjct 6969155 GAAAATCAAATGTTTGATTAATGGGATTTACAAACATATTAACAGCAATTGAAGCTAAAT 6969096 Query 79631 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTAC 79690 |||| || || || |||| | | | ||| || | | ||| || || | ||||||| Sbjct 6969095 TACACACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTAC 6969036 Query 79691 ACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 79750 ||| || ||||||| |||||| ||||| || || || ||| |||||||| | Sbjct 6969035 TCTTTATTGTTCCTATATTTTGATGATTTGATTTGCGATTGCAGTGATCTTTATAAAGCA 6968976 Query 79751 TGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 79810 | | ||||| || ||||||| ||||| | ||| ||| |||| | ||| ||| | Sbjct 6968975 TATATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTAGCTT 6968916 Query 79811 TTATTATAGACTTGTATCTCTTTTCTCTTTC 79841 || | | | | ||| ||||||||| ||| Sbjct 6968915 GAAT--TTGTCGTTTATATCTTTTCTCATTC 6968887 Score = 104 bits (114), Expect = 3e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 ||||||| |||| ||||||| || || ||||| || | || |||| || ||||| | Sbjct 6967722 CACTAAAACTTTTTGTTGTTTCTTTATGAAGATTAGAAATTGCAATTCGTGCAGCTAATA 6967663 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 | |||||||||||||||| ||||| ||| |||||| |||| ||||| ||| | || | Sbjct 6967662 TTGCATAATCTGGATGTTTGGTAGTCATAGTTGCTGCTGTTTCAGCTGCAAGATTATCTA 6967603 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAAC 80837 |||| || || ||||| || ||||| || |||||| Sbjct 6967602 ATTCAACAGTAGTTACACCTGAATATAAACCACTGATAAC 6967563 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/167 (73%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 79847 GTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAG 79906 ||||||| | ||| || || | ||||||||||| | || |||||| |||| | | Sbjct 6968627 GTGTATAGAGAATTTCAAATTCATTGCCCCAAACATCAGCCAAACCAGGAGATTCATGTG 6968568 Query 79907 GACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCC 79966 ||||||| || | ||| ||| |||| |||||||||||||| |||||||| |||| Sbjct 6968567 GACACATTAAAGTCCATATATCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCC 6968508 Query 79967 AAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT 80012 | | ||| ||| |||| ||||| | ||||| || || || ||||| Sbjct 6968507 ATAAAGC-ATAGAATAATTCTCTTGCTCTATTTTCTTCTTTACCTGT 6968462 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 || |||||||| | |||| | ||| || | |||||| || || || || || || ||| Sbjct 6969501 TAAGTTTCATATGTACCTTTTTCTTCAGCAAGTTCACAGCTGGCTTCCAAAGCACCATAA 6969442 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 || | ||||| || || | |||| || | |||||||||| || |||||||||||| Sbjct 6969441 TATAGTGTTTCAAATATTTGAATATTAAGTTTTTGTGCTTCTTCACTTTCAAATGGATAA 6969382 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 79463 | | || ||| || ||||| | ||||||| |||||||| Sbjct 6969381 CGCATTAAAAGAAATGCATCTGCAAGACCTTGAATTCCAATACC 6969338 >seq15 Length=10167229 Score = 158 bits (174), Expect = 2e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 50230 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 50289 || ||||| || || | | ||||||||| ||||||| ||||| ||||| | ||||| Sbjct 2293316 TATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAA 2293375 Query 50290 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTT 50349 || |||||||| | ||||| || || || |||||| || |||||||||| | | ||| Sbjct 2293376 CCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGATTC 2293435 Query 50350 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTT 50409 ||||| || ||||| ||| ||||||||||| || || ||||| ||||||||||||| Sbjct 2293436 TCATTAACAATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATATAAAATGTTTT 2293495 Query 50410 TCGTTGGGTGTTAGTTTATTCCAATCA 50436 || ||| |||| |||||||||||| Sbjct 2293496 TCACTGGCAGTTAAATTATTCCAATCA 2293522 Score = 104 bits (114), Expect = 3e-17 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 49756 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATAT 49815 ||| ||| |||||| | || ||||| || ||||||||| || |||||||| |||||| Sbjct 2292655 TTACAAACCTTTTTACAACCTAATTCTACAAGCAATCTATCTGCAACAAATTCGATATAT 2292714 Query 49816 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAAT 49875 ||| | || ||||||||| ||||| | || ||| || | || | || | |||| Sbjct 2292715 TGACACATAAGTTTACAATTCATGCCTATCATTTCAACAGGTAATGCATCTGTCAAAAAT 2292774 Query 49876 TCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGG- 49934 ||||||||||| || |||||| | ||||| ||| | || | ||||| | ||| Sbjct 2292775 TCTTGTTCAATTTTGACAGCATCTTTAATAATTGATGTGAC---TCGTTCACAAGATGGT 2292831 Query 49935 --ATGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 49984 || | | ||||| ||||| |||||||| ||||| || || | |||| Sbjct 2292832 TTTTGTACAATGTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 2292883 Score = 102 bits (112), Expect = 1e-16 Identities = 155/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||||| ||| || || ||| ||| || ||||| ||||| || || | ||||| Sbjct 2292988 CCTCATCTCTAGAAATAAGCTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTCTTTT 2293047 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| || || | ||||| ||| |||||| || ||||||||||| ||||| | Sbjct 2293048 TTAACCAGAAAATAGCGGCAAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 2293107 Query 50102 CAACAAGTCTCTCTCCATAACTGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGG 50158 |||| | | || | || | || || ||||| |||||| ||| ||||||| | Sbjct 2293108 CAACTACACGTTCAGGAAAAGTAGCACTTTCATGATTTATCCAATTTAACGCCCAATGAG 2293167 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 | || ||| ||||| |||| |||| || |||||||| Sbjct 2293168 CTTTTTTTGCAACACATGGCAAATTTTCAATAGCATTAAA 2293207 Score = 100 bits (110), Expect = 4e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 50444 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 50503 ||||||| | ||| |||||||| ||||||||||| ||||| || || ||||||||||| | Sbjct 2293605 CTTTAGAAAGATCCACTTCTTCTACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTT 2293664 Query 50504 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 ||| || ||| | | || || || |||| |||||||||| ||||||| Sbjct 2293665 GCCAAATATCAGGCCACTGAATAGGAAAAACAACAAATCTACGTGGATTT 2293714 Score = 87.8 bits (96), Expect = 3e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715 ||| |||||| |||||| ||||| ||||| |||||| || || || || || ||||| Sbjct 2292484 CATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTCTTACCTTC 2292543 Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATT 49748 || || |||| ||||||||||||||||||||| Sbjct 2292544 TAAAGAAATATGTTCCATGAAATCAAACGGATT 2292576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718221026146440