Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq15 123 2e-23 >seq15 Length=10167229 Score = 123 bits (136), Expect = 2e-23 Identities = 165/227 (73%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 13674 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGAC 13733 || || | |||||||| ||||| || |||||||| |||| ||| || ||||||||| || Sbjct 2292661 ACCTTTTTACAACCTAATTCTACAAGCAATCTATCTGCAACAAATTCGATATATTGACAC 2292720 Query 13734 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTT 13793 || | | ||||||||| ||||| | || ||||| | | || || |||||||||| | Sbjct 2292721 ATAAGTTTACAATTCATGCCTATCATTTCAACAGGTAATGCATCTGTCAAAAATTCTTGT 2292780 Query 13794 TCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCATT-AGAAGGAGGATATTT 13852 || || ||||| ||||| ||||| ||| | ||| || | ||| || | || Sbjct 2292781 TCAATTTTGACAGCATCTTTAATAATTGATGTGA----CTCGTTCACAAGATGGTTTTTG 2292836 Query 13853 TAGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 13896 || | ||||| || |||||||| |||||||||||||| | |||| Sbjct 2292837 TACAATGTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 2292883 Score = 109 bits (120), Expect = 5e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||||||| |||||| || || |||||| | ||||||||| | |||| |||| Sbjct 2292988 CCTCATCTCTAGAAATAAGCTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTCTTTT 2293047 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 ||||||| || || || ||||| || |||||| || || || ||||||||||| | Sbjct 2293048 TTAACCAGAAAATAGCGGCAAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 2293107 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14073 | | || ||||| ||| | || ||| | |||||| ||| ||||| | || Sbjct 2293108 CAACTACACGTTCAGGAAAAGTAGCACTTTCATGATTTATCCAATTTAACGCCCAATGAG 2293167 Query 14074 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14116 ||||||| || | | || ||||||||||||||||||| Sbjct 2293168 CTTTTTTTGCAACACATGGCAAATTTTCAATAGCATTAAATAA 2293210 Score = 105 bits (116), Expect = 6e-18 Identities = 135/182 (74%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 14122 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14181 |||| ||||| | | || ||||||||||||||| | || ||||||||| || || | Sbjct 2293294 CCTT-TCTTTTGCATCTGCAATGTATGTATCAATTAACAAAGAATACATTTCTGAATGAA 2293352 Query 14182 TGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC-C 14240 |||||||| || | ||||||||||| || || | || || | ||||||||| Sbjct 2293353 CATTTTCCATGGCAACTTGAAAACCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTT 2293412 Query 14241 GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC 14300 || | ||||| ||| | | ||| |||||||| || |||||| ||||||||||||||| Sbjct 2293413 GACT-AAATCGTTCAACAAGATTCTCATTAACAATTCCATCAGAAGCTGCAAAAAATGCT 2293471 Query 14301 AA 14302 || Sbjct 2293472 AA 2293473 Score = 95.1 bits (104), Expect = 1e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 13569 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13628 || || ||| |||||||||||| | ||| |||||||||||||||| || |||||||| Sbjct 2292485 ATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTCTTACCTTCT 2292544 Query 13629 AGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATA 13670 | || |||| |||||| |||||||| |||||| |||||| Sbjct 2292545 AAAGAAATATGTTCCATGAAATCAAACGGATTTTCAGACATA 2292586 Score = 82.4 bits (90), Expect = 7e-11 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 14361 TTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACC 14420 ||||||||||| ||||| || |||||||||||| || ||||||||||||||||| | Sbjct 2293607 TTAGAAAGATCCACTTCTTCTACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTTGC 2293666 Query 14421 CATATTTCTTTATATAATATAGGAAAAACTACAAATCT-CGAAGATGTTTCTTT 14473 || || || | ||||||||||| |||||||| || ||| ||||||| Sbjct 2293667 CAAATATCAGGCCACTGAATAGGAAAAACAACAAATCTACGTGGAT-TTTCTTT 2293719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479696092091400