Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq15 105 6e-18 >seq15 Length=10167229 Score = 105 bits (116), Expect = 6e-18 Identities = 161/227 (71%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 13462 ACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGAC 13521 || || | |||||||| ||||| | |||||||| |||| ||| || ||||||||| || Sbjct 2292661 ACCTTTTTACAACCTAATTCTACAAGCAATCTATCTGCAACAAATTCGATATATTGACAC 2292720 Query 13522 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTT 13581 || | | ||||||||| ||||| | || ||||| | | || || |||||||||| | Sbjct 2292721 ATAAGTTTACAATTCATGCCTATCATTTCAACAGGTAATGCATCTGTCAAAAATTCTTGT 2292780 Query 13582 TCTATAGACACAGCCTCGTTTATAATA-ATCTTAATAATGTCATTAGAAGGAGGATATTT 13640 || || ||||| || || ||||| || | | | | | | ||| || | || Sbjct 2292781 TCAATTTTGACAGCATCTTTAATAATTGATGTGACTCGT----TCACAAGATGGTTTTTG 2292836 Query 13641 TAGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 13684 || | ||||| || |||||||| |||||||||||||| | |||| Sbjct 2292837 TACAATGTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 2292883 Score = 105 bits (116), Expect = 6e-18 Identities = 135/182 (74%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 13910 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 13969 |||| ||||| | | || ||||||||||||||| | || ||||||||| || || | Sbjct 2293294 CCTT-TCTTTTGCATCTGCAATGTATGTATCAATTAACAAAGAATACATTTCTGAATGAA 2293352 Query 13970 TGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-C 14028 ||||| || || | ||||||||||| ||||| | || |||| |||||| || Sbjct 2293353 CATTTTCCATGGCAACTTGAAAACCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTT 2293412 Query 14029 GAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCC 14088 || | ||||| ||| | | || ||||||||||| |||||| ||||||||||||||| Sbjct 2293413 GACT-AAATCGTTCAACAAGATTCTCATTAACAATTCCATCAGAAGCTGCAAAAAATGCT 2293471 Query 14089 AA 14090 || Sbjct 2293472 AA 2293473 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/225 (70%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||||||| |||||| || || |||||| | ||||||||| | |||| |||| Sbjct 2292988 CCTCATCTCTAGAAATAAGCTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTCTTTT 2293047 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 ||||||| || || || || || || |||||| || || || ||||||||||| | Sbjct 2293048 TTAACCAGAAAATAGCGGCAAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 2293107 Query 13802 CTATTAGTCGTTCTCCAAACGATG--CTTTTTTGTTTGATATCCATTTTCTAGCCCATTC 13859 | | || ||||| ||| | | |||| || || |||||| ||| ||||| | Sbjct 2293108 CAACTACACGTTCAGGAAAAGTAGCACTTTCATGATT--TATCCAATTTAACGCCCAATG 2293165 Query 13860 AGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAA 13904 || ||||||| || | | || |||| || ||||| ||||| Sbjct 2293166 AGCTTTTTTTGCAACACATGGCAAATTTTCAATAGCATTAAATAA 2293210 Score = 86.0 bits (94), Expect = 6e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 13357 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCC 13416 || || ||| |||||||||||| | ||| |||||||||| ||||| || |||||||| Sbjct 2292485 ATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTCTTACCTTCT 2292544 Query 13417 AGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATA 13458 | || |||| |||||| ||||| || |||||| |||||| Sbjct 2292545 AAAGAAATATGTTCCATGAAATCAAACGGATTTTCAGACATA 2292586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478556967862440