Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq6 122 7e-23 seq1 114 1e-20 >seq6 Length=18472937 Score = 122 bits (134), Expect = 7e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| |||| || || | ||| | || || ||||| | |||||||||||| Sbjct 4824964 CCACCACGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAA 4824905 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || |||| ||||| |||||||| ||||||| ||||||||| | || Sbjct 4824904 AGAGTACGACCATCTTCCAGCTGTTTACCGGCAAAGATCAATCTCTGTTGATCAGGAGGA 4824845 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||||||| || ||| || |||| || | ||| || || ||| || || Sbjct 4824844 ATACCTTCTTTATC-CTGAATTTTAGCTTTAACATTTTCAATAGTATCTGAAGCTTCAAC 4824786 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| || ||||||||||| || || ||||| ||||||||||||||| Sbjct 4824785 TTCTAAAGTAATAGTTTTTCCAGTGAGTGTTTTGACAAAAATTTGCATT 4824737 Score = 120 bits (132), Expect = 2e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | |||||||||||| | ||||| | || |||| |||||| |||||||| Sbjct 4825156 TCTTTTTGAATATTGTAATCGGAAAGAGTACGACCATCTTCCAGTTGTTTACCGGCAAAG 4825097 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCT 43037 || |||| ||||||||| | || | ||||||||| || ||| || |||| || | Sbjct 4825096 ATTAATCTCTGTTGATCAGGAGGAATACCTTCTTTATC-CTGAATTTTGGCTTTAACATT 4825038 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| || || ||| || || |||| || ||||||||||| || || ||||| || Sbjct 4825037 TTCAATAGTATCTGAAGCTTCAACTTCTAAAGTAATAGTTTTTCCAGTGAGTGTTTTGAC 4824978 Query 43098 AAAAATTTGCATT 43110 ||||||||||||| Sbjct 4824977 AAAAATTTGCATT 4824965 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| |||| || || | ||| | || ||| ||||| | |||||||||||| Sbjct 4826560 CCACCACGAAGTCGCAAAACAAGATGAAGTGTAGACTCTTTTTGAATATTGTAATCGGAA 4826501 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || |||| |||||| || ||||| || |||| ||||||||| | || Sbjct 4826500 AGAGTACGACCATCCTCCAGTTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGGGGA 4826441 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || || |||| || | ||| || ||| ||| || || Sbjct 4826440 ATACCTTCTTTGTCTTGAATTTTGGCTTTCACATTTTCAATGGTATCGGAAGCTTCTACT 4826381 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || ||||| ||||| || |||||||| || |||||||||||| Sbjct 4826380 TCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTGACGAAAATTTGCATT 4826333 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | ||| |||||||| | |||||| | || |||| ||||| || |||||| Sbjct 4826752 TCTTTTTGAATATTATAATCGGAAAGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAA 4826693 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||||| ||||||||| | || | ||||||||| || || |||| || | Sbjct 4826692 ATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTT 4826633 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| |||||| ||| || || || | || |||||||| || || ||||| || ||| Sbjct 4826632 TCAATTGTGTCAGAAGCTTCAACTTCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGACA 4826573 Query 43099 AAAATTTGCAT 43109 ||||||||||| Sbjct 4826572 AAAATTTGCAT 4826562 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| |||| || || | ||| | || ||| ||||| | |||||||||||| Sbjct 4825420 CCACCACGAAGTCGCAAAACAAGATGAAGTGTAGACTCTTTTTGAATATTGTAATCGGAA 4825361 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || || |||||||| || ||||| ||||||| |||||| || | || Sbjct 4825360 AGAGTACGACCATCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGA 4825301 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || ||| |||| || | ||| || || ||| || || Sbjct 4825300 ATACCTTCTTTGTCTTGAATCTTAGCTTTTACATTTTCAATGGTATCAGAAGCTTCTACT 4825241 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||||||||| || || ||||| || ||||||||||| Sbjct 4825240 TCAAGAGTAATAGTTTTTCCTGTAAGGGTTTTGACGAAAATTTGCAT 4825194 Score = 105 bits (116), Expect = 5e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | ||| |||||||| | ||||| | || |||| |||||| |||||||| Sbjct 4825612 TCTTTTTGAATATTATAATCGGAAAGAGTACGACCATCTTCCAGTTGTTTACCGGCAAAG 4825553 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCT 43037 ||||||| ||||||||| | || | ||||||||| || |||| | |||| || | Sbjct 4825552 ATCAATCTCTGTTGATCTGGAGGAATACCTTCTTTATC-CTGAATTTTGGCTTTAACATT 4825494 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| || || ||| || || || | || ||||| ||||| || || ||||| || Sbjct 4825493 TTCAATGGTATCTGAAGCTTCAACTTCGAGAGTAATAGTCTTTCCTGTAAGGGTTTTGAC 4825434 Query 43098 AAAAATTTGCAT 43109 ||||||||||| Sbjct 4825433 GAAAATTTGCAT 4825422 Score = 105 bits (116), Expect = 5e-18 Identities = 166/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTC--TCCTTTTGCACATTGTAATCGG 42940 ||||| |||| | || || ||||| ||||| | || ||||| | ||||||||| | Sbjct 4826332 CCTCCTCGCAAACGCAATACTAAATG--TAGTGTTGATTCTTTTTGAATATTGTAATCCG 4826275 Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000 | | |||||| | || |||| |||||| || ||||||||||||| ||| ||||| | | Sbjct 4826274 AAAGTGTACGACCATCTTCCAGTTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGAG 4826215 Query 43001 GCACACCTTCTTTTTCGCTGA--TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTC 43058 | | ||| || || || ||| | | | ||| || | ||| || ||| || || Sbjct 4826214 GGATACCCTCCTTATC-TTGAATTTTAGT-TTTAACATTTTCAATAGTATCGGATGCTTC 4826157 Query 43059 GACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || || | || || ||||||||||| |||||||| || |||||||||||| Sbjct 4826156 AACCTCCAAAGTGATGGTTTTTCCGGTAAGAGTTTTGACGAAAATTTGCATT 4826105 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| |||| || || | ||| | || || ||||| | |||||||||||| Sbjct 4825876 CCACCACGAAGTCGTAGAACGAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAA 4825817 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || || |||||||| || ||||| ||||||| ||||| || | || Sbjct 4825816 AGAGTACGACCATCTTCTAATTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCAGGAGGA 4825757 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || ||| |||| || | ||| || || ||| || || Sbjct 4825756 ATACCTTCTTTGTCTTGAATCTTAGCTTTTACATTTTCAATAGTATCAGAAGCTTCTACT 4825697 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| ||||| || || ||||| || ||||||||||| Sbjct 4825696 TCAAGAGTAATAGTCTTTCCTGTAAGGGTTTTGACGAAAATTTGCAT 4825650 Score = 82.4 bits (90), Expect = 6e-11 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | ||| ||||| || | |||||| | || |||| ||||| || |||||| Sbjct 4826068 TCTTTTTGAATATTATAATCCGAAAGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAA 4826009 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA--TCAACTCTTTGACTC 43036 ||||||| ||| ||||| | || | ||| || || || ||| | | | ||| || Sbjct 4826008 ATCAATCTCTGCTGATCTGGAGGAATACCCTCCTTATC-TTGAATTTTAGT-TTTAACAT 4825951 Query 43037 TGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 | | | || ||| || || || || | || || ||||||||||| ||||| || | Sbjct 4825950 TTTCGATAGTATCGGATGCTTCAACCTCCAAAGTGATGGTTTTTCCGGTAAGAGTCTTAA 4825891 Query 43097 CAAAAATTTGCAT 43109 | ||||||||||| Sbjct 4825890 CGAAAATTTGCAT 4825878 >seq1 Length=29893408 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| ||||| || |||| ||| | ||| || || || | ||||||||| || Sbjct 27601639 CCTCCACGAAGTCTCAATACCAGATGAAGAGTAGATTCTTTCTGAATATTGTAATCTGAG 27601698 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | | || || | ||||| || ||||| |||||||| || ||||| | || Sbjct 27601699 AGTGTTCTTCCATCTTCAAGCTGTTTTCCAGCAAAGATCAATCGTTGCTGATCAGGAGGA 27601758 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| |||| || | | | ||| || ||| || || Sbjct 27601759 ATTCCTTCTTTGTCTTGAATCTTAGCTTTTACGTTTTCTATTGTATCTGAAGCTTCAACT 27601818 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || |||||||| || ||||||||||| ||||||||||||||| Sbjct 27601819 TCAAGAGTGATAGTTTTCCCAGTTAGAGTTTTGACAAAAATTTGCATT 27601866 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || ||||| || |||||||| | ||| || || || | ||||||||| || Sbjct 27602095 CCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTGTAATCTGAG 27602154 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | | || || | |||||| || |||||||| || || |||||||| | || Sbjct 27602155 AGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAAACGTTGTTGATCAGGAGGA 27602214 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| | || || | | | ||| || ||| || || Sbjct 27602215 ATTCCTTCTTTGTCTTGAATCTTAGCCTTTACGTTCTCTATTGTATCCGAAGCTTCAACC 27602274 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || ||||||||||| ||||||||||| ||||| ||||||||| Sbjct 27602275 TCAAGAGTGATAGTTTTTCCAGTTAGAGTTTTGACAAAGATTTGCATT 27602322 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || |||||||| |||| ||| | ||| || || || | ||||||||| || Sbjct 27602551 CCTCCTCGAAGTCTTAATACCAGATGAAGAGTAGATTCTTTCTGAATATTGTAATCTGAG 27602610 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | | || || | ||||| || ||||||||||| || |||||||| | || Sbjct 27602611 AGTGTTCTTCCATCTTCAAGCTGTTTTCCAGCAAAAATCAAACGTTGTTGATCAGGAGGA 27602670 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| |||| || | | | ||| || ||| || || Sbjct 27602671 ATTCCTTCTTTGTCTTGAATCTTAGCTTTTACGTTCTCTATTGTATCTGAAGCTTCAACT 27602730 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || |||||||| || || |||||||| |||||||||||||| Sbjct 27602731 TCAAGAGTGATAGTTTTCCCAGTAAGAGTTTTAACAAAAATTTGCAT 27602777 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | ||||| ||||| ||||||| || |||||||| | ||| ||||| || Sbjct 27604751 CCTCCTCTAAGTCTCAACACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAG 27604810 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | | || || | |||||| || ||||| ||||| || || ||||| | || Sbjct 27604811 AGAGTTCTTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAGCGTTGCTGATCAGGGGGA 27604870 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| | || || | | | |||||| ||| || || Sbjct 27604871 ATTCCTTCTTTGTCTTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCTTCAACT 27604930 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || ||||||||||| || |||||||| ||||||||||||||| Sbjct 27604931 TCAAGTGTGATAGTTTTTCCAGTAAGAGTTTTGACAAAAATTTGCATT 27604978 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || ||||| || |||| ||| | ||| || || || | ||||||||| || Sbjct 27602323 CCCCCTCGAAGTCTCAATACCAGATGAAGAGTAGATTCTTTCTGAATATTGTAATCTGAG 27602382 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | | || || |||||||| || ||||| || || || |||||||| | || Sbjct 27602383 AGTGTTCTTCCATCTTCTAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCAGGAGGA 27602442 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| | || || | | | ||| || ||| || || Sbjct 27602443 ATTCCTTCTTTGTCTTGAATCTTAGCCTTTACGTTTTCTATTGTATCTGAAGCTTCAACT 27602502 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || |||||||| || ||||||||||| ||||||||||||||| Sbjct 27602503 TCAAGAGTGATAGTTTTCCCAGTTAGAGTTTTGACAAAAATTTGCATT 27602550 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 42880 TCGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCG 42939 || ||||| || ||||| || ||||| || | || || || || | ||||||||| Sbjct 27601408 TCTCCTCCTCGAAGTCTCAATACCAAGTGCAATGTAGATTCTTTCTGAATATTGTAATCT 27601467 Query 42940 GACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCC 42999 | | ||| | | | || || | |||||| || |||||||||||||| || ||||| | Sbjct 27601468 AAGAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATCAGGA 27601527 Query 43000 GGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCG 43059 || | |||||||| || ||| | || || | | | || || ||| || Sbjct 27601528 GGAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTTTCTATGGTATCCGAAGCTTCA 27601587 Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || || | || ||||||||||| || |||||||| ||||| ||||||||| Sbjct 27601588 ACTTCAAGTGTAATAGTTTTTCCAGTAAGAGTTTTAACAAAGATTTGCATT 27601638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381344868300618