Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq6 109 5e-19 seq1 100 2e-16 >seq6 Length=18472937 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||||||||| | || || | || | || || || ||||||||||||||||||| Sbjct 4826334 TTCCTCCTCGCAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTGTAATCCG 4826275 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | ||| | || ||||| |||||||| ||| |||| | |||||||||||| | Sbjct 4826274 AAAGTGTACGACCATCTTCCAGTTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGAG 4826215 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||| || || |||||| ||| || | | | ||||||| | || Sbjct 4826214 GGATACCCTCCTTATCTTGAATTTTAGTTTTAACATTTTCAATAGTATCGGATGCTTCAA 4826155 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | || |||||||| || || | ||||||||| |||||||||||| Sbjct 4826154 CCTCCAAAGTGATGGTTTTTCCGGTAAGAGTTTTGACGAAAATTTGCATT 4826105 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 |||||||| ||||||||||||||||| | | || | |||||||| |||||||| Sbjct 4826530 GTAGACTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCATCCTCCAGTTGTTTACCA 4826471 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || | |||||| ||||| ||| | || |||||||| |||||| ||| Sbjct 4826470 GCAAAGATTAATCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATTTTGGCTTTC 4826411 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | |||||| || || ||| | ||||| || || ||||| | |||| Sbjct 4826410 ACATTTTCAATGGTATCGGAAGCTTCTACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTT 4826351 Query 19025 TTGACAAAAATTTGCATT 19042 ||||| |||||||||||| Sbjct 4826350 TTGACGAAAATTTGCATT 4826333 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||| ||| | || || | || || || || || ||||||||||| ||||||| Sbjct 4826106 TTCCACCTCTCAAACGCAATACTAAATGTAATGTTGATTCTTTTTGAATATTATAATCCG 4826047 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | ||| | || |||||||||||||| ||| |||| | |||||||||||| | Sbjct 4826046 AAAGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGAG 4825987 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||| || || |||||| ||| || | ||| ||||||| | || Sbjct 4825986 GAATACCCTCCTTATCTTGAATTTTAGTTTTAACATTTTCGATAGTATCGGATGCTTCAA 4825927 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || |||||||| || || | ||| || || ||||||||||| Sbjct 4825926 CCTCCAAAGTGATGGTTTTTCCGGTAAGAGTCTTAACGAAAATTTGCAT 4825878 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || || ||||||||||| ||||| | | ||| | || |||||||||||||| Sbjct 4826758 GTCGATTCTTTTTGAATATTATAATCGGAAAGTGTACGACCATCTTCCAGCTGTTTACCA 4826699 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| | |||||| ||||| || | || |||||||| |||||| |||| Sbjct 4826698 GCAAAAATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTCTTGAATTTTTGCTTTT 4826639 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | || || || || ||| | ||||| |||||||| || | ||| Sbjct 4826638 ACATTTTCAATTGTGTCAGAAGCTTCAACTTCAAGAGTAATAGTTTTACCCGTGAGAGTC 4826579 Query 19025 TTGACAAAAATTTGCAT 19041 ||||||||||||||||| Sbjct 4826578 TTGACAAAAATTTGCAT 4826562 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| || ||||||||||||||||| | | || | || |||||||||||||| Sbjct 4824934 GTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCATCTTCCAGCTGTTTACCG 4824875 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || | |||||| ||||| || | || ||||| || |||||| ||| Sbjct 4824874 GCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTATCCTGAATTTTAGCTTTA 4824815 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | |||||| || || ||| | ||||| ||||| || || | ||| Sbjct 4824814 ACATTTTCAATAGTATCTGAAGCTTCAACTTCTAAAGTAATAGTTTTTCCAGTGAGTGTT 4824755 Query 19025 TTGACAAAAATTTGCATT 19042 |||||||||||||||||| Sbjct 4824754 TTGACAAAAATTTGCATT 4824737 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| || ||||||||||||||||| | | || | || ||||| |||||||| Sbjct 4825162 GTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCATCTTCCAGTTGTTTACCG 4825103 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || | |||||| ||||| || | || ||||| || |||||| ||| Sbjct 4825102 GCAAAGATTAATCTCTGTTGATCAGGAGGAATACCTTCTTTATCCTGAATTTTGGCTTTA 4825043 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | |||||| || || ||| | ||||| ||||| || || | ||| Sbjct 4825042 ACATTTTCAATAGTATCTGAAGCTTCAACTTCTAAAGTAATAGTTTTTCCAGTGAGTGTT 4824983 Query 19025 TTGACAAAAATTTGCATT 19042 |||||||||||||||||| Sbjct 4824982 TTGACAAAAATTTGCATT 4824965 >seq1 Length=29893408 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| || | || || |||| || | ||||| || || |||||||||||||| | Sbjct 27601637 TTCCTCCACGAAGTCTCAATACCAGATGAAGAGTAGATTCTTTCTGAATATTGTAATCTG 27601696 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | |||| | | || || |||||||| || ||| | || | || |||||||| | Sbjct 27601697 AGAGTGTTCTTCCATCTTCAAGCTGTTTTCCAGCAAAGATCAATCGTTGCTGATCAGGAG 27601756 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || |||||||| ||| || |||||| | | | ||||| || || Sbjct 27601757 GAATTCCTTCTTTGTCTTGAATCTTAGCTTTTACGTTTTCTATTGTATCTGAAGCTTCAA 27601816 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| | || || ||||| || |||| |||||||||||||||||||||| Sbjct 27601817 CTTCAAGAGTGATAGTTTTCCCAGTTAGAGTTTTGACAAAAATTTGCATT 27601866 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18814 TCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGC 18873 ||||||||| | || || |||| |||||| ||||| || || |||||||||||||| Sbjct 27601410 TCCTCCTCGAAGTCTCAATACCAAGTGCAATGTAGATTCTTTCTGAATATTGTAATCTAA 27601469 Query 18874 CATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGG 18933 | |||| | | || || || ||||| || ||| |||| | || |||||||| || Sbjct 27601470 GAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATCAGGAGG 27601529 Query 18934 CACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGT 18993 | || ||||| || ||| || ||||| | | | ||||| || || Sbjct 27601530 AATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTTTCTATGGTATCCGAAGCTTCAAC 27601589 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| | ||||| ||||| || || | |||||| ||||| ||||||||| Sbjct 27601590 TTCAAGTGTAATAGTTTTTCCAGTAAGAGTTTTAACAAAGATTTGCATT 27601638 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||||||||| | ||||| |||| || | ||||| || || |||||||||||||| | Sbjct 27602549 TTCCTCCTCGAAGTCTTAATACCAGATGAAGAGTAGATTCTTTCTGAATATTGTAATCTG 27602608 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | |||| | | || || |||||||| || ||| |||| | | || ||||| | Sbjct 27602609 AGAGTGTTCTTCCATCTTCAAGCTGTTTTCCAGCAAAAATCAAACGTTGTTGATCAGGAG 27602668 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || |||||||| ||| || |||||| | | | ||||| || || Sbjct 27602669 GAATTCCTTCTTTGTCTTGAATCTTAGCTTTTACGTTCTCTATTGTATCTGAAGCTTCAA 27602728 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | || || ||||| || || | |||||| |||||||||||||| Sbjct 27602729 CTTCAAGAGTGATAGTTTTCCCAGTAAGAGTTTTAACAAAAATTTGCAT 27602777 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||||||||| | ||||| |||| || | ||||| || || |||||||||||||| | Sbjct 27601865 TTCCTCCTCGAAGTCTTAATACCAGATGAAGAGTAGATTCTTTCTGAATATTGTAATCTG 27601924 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | |||| | | || || | |||||||| ||| | || | | || ||||| | Sbjct 27601925 AGAGTGTTCTTCCATCTTCTAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCAGGAG 27601984 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || |||||||| ||| || ||||| | | | ||||| || || Sbjct 27601985 GAATTCCTTCTTTGTCTTGAATCTTAGCCTTTACGTTCTCTATTGTATCCGAAGCTTCAA 27602044 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| | || || ||||| || || | ||||||||||||||| |||||| Sbjct 27602045 CTTCAAGAGTGATAGTTTTCCCAGTAAGAGTTTTGACAAAAATCTGCATT 27602094 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||||||||| | || || |||| || | ||||| || || |||||||||||||| | Sbjct 27602093 TTCCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTGTAATCTG 27602152 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | |||| | | || || || ||||| || ||| |||| | | || ||||| | Sbjct 27602153 AGAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAAACGTTGTTGATCAGGAG 27602212 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || |||||||| ||| || ||||| | | | ||||| || || Sbjct 27602213 GAATTCCTTCTTTGTCTTGAATCTTAGCCTTTACGTTCTCTATTGTATCCGAAGCTTCAA 27602272 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | || || ||||| || |||| |||||||||||| ||||||||| Sbjct 27602273 CCTCAAGAGTGATAGTTTTTCCAGTTAGAGTTTTGACAAAGATTTGCATT 27602322 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| ||||| | || || |||| || | ||||| || || |||||||||||||| | Sbjct 27602321 TTCCCCCTCGAAGTCTCAATACCAGATGAAGAGTAGATTCTTTCTGAATATTGTAATCTG 27602380 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | |||| | | || || | |||||||| ||| | || | | || ||||| | Sbjct 27602381 AGAGTGTTCTTCCATCTTCTAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCAGGAG 27602440 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || |||||||| ||| || ||||| | | | ||||| || || Sbjct 27602441 GAATTCCTTCTTTGTCTTGAATCTTAGCCTTTACGTTTTCTATTGTATCTGAAGCTTCAA 27602500 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| | || || ||||| || |||| |||||||||||||||||||||| Sbjct 27602501 CTTCAAGAGTGATAGTTTTCCCAGTTAGAGTTTTGACAAAAATTTGCATT 27602550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414545915083474