Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq6 136 3e-27 seq4 118 8e-22 seq1 95.1 9e-15 >seq6 Length=18472937 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||| || | || || |||||||| || ||||||||||||||||||||| | Sbjct 4824736 CCACCTCTTAAACGTAGTACTAAATGTAGTGTTGACTCTTTTTGAATATTATAATCAGAT 4824677 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| |||| |||| || |||||||| || ||||| ||||| | |||||| || | || Sbjct 4824676 AATGTACGCCCATCTTCTAATTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGGA 4824617 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||| || ||| |||||| ||| || | ||| ||||||| | ||| || Sbjct 4824616 ATTCCTTCCTTGTCTTGAATTTTCGCTTTTACATTTTCAATGGTATCTGAGGCCTCAACC 4824557 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || ||||||||||| || || || || ||||| || |||||| Sbjct 4824556 TCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCATG 4824509 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||| ||| | || || |||||||| || |||||||||||||| ||||| Sbjct 4826332 CCTCCTCGCAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTGTAATCCGAA 4826273 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | ||| |||| |||| |||||| || ||||| ||||| | ||||| || |||| Sbjct 4826272 AGTGTACGACCATCTTCCAGTTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGAGGG 4826213 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||| || |||||| |||||| ||| || | ||| |||||| | | || || Sbjct 4826212 ATACCCTCCTTATCTTGAATTTTAGTTTTAACATTTTCAATAGTATCGGATGCTTCAACC 4826153 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| ||||| | ||| || || || |||||||| Sbjct 4826152 TCCAAAGTGATGGTTTTTCCGGTAAGAGTTTTGACGAAAATTTGCAT 4826106 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 ||||||||||||||||||||| | | ||| |||| |||| ||||| || ||||| Sbjct 4826752 TCTTTTTGAATATTATAATCGGAAAGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAA 4826693 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| | || || || |||| | ||||||||| ||| ||||||| ||| || | Sbjct 4826692 ATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTT 4826633 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| || || | | || || || | ||||| |||||||| || | |||||| ||| Sbjct 4826632 TCAATTGTGTCAGAAGCTTCAACTTCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGACA 4826573 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 4826572 AAAATTTGCAT 4826562 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || |||||||| | || || ||||||| || |||||||||||||||||||| Sbjct 4826104 CCACCTCTCAAACGCAATACTAAATGTAATGTTGATTCTTTTTGAATATTATAATCCGAA 4826045 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | ||| |||| |||| ||||| || ||||| ||||| | ||||| || |||| Sbjct 4826044 AGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGAGGA 4825985 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||| || |||||| |||||| ||| || | | | |||||| | | || || Sbjct 4825984 ATACCCTCCTTATCTTGAATTTTAGTTTTAACATTTTCGATAGTATCGGATGCTTCAACC 4825925 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| ||||| | |||||| || || |||||||| Sbjct 4825924 TCCAAAGTGATGGTTTTTCCGGTAAGAGTCTTAACGAAAATTTGCAT 4825878 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||||||||||||| |||||| | ||| |||| |||| ||||| || ||||| Sbjct 4824928 TCTTTTTGAATATTGTAATCGGAAAGAGTACGACCATCTTCCAGCTGTTTACCGGCAAAG 4824869 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| | || || || |||| | |||||||||||| |||||| ||| || | Sbjct 4824868 ATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTATCCTGAATTTTAGCTTTAACATTT 4824809 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| |||||||| | || || || | ||||| ||||| || || | || || ||| Sbjct 4824808 TCAATAGTATCTGAAGCTTCAACTTCTAAAGTAATAGTTTTTCCAGTGAGTGTTTTGACA 4824749 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 4824748 AAAATTTGCAT 4824738 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||||||||||||| |||||| | ||| |||| |||| |||||| || ||||| Sbjct 4825156 TCTTTTTGAATATTGTAATCGGAAAGAGTACGACCATCTTCCAGTTGTTTACCGGCAAAG 4825097 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 || || | || || || |||| | |||||||||||| |||||| ||| || | Sbjct 4825096 ATTAATCTCTGTTGATCAGGAGGAATACCTTCTTTATCCTGAATTTTGGCTTTAACATTT 4825037 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| |||||||| | || || || | ||||| ||||| || || | || || ||| Sbjct 4825036 TCAATAGTATCTGAAGCTTCAACTTCTAAAGTAATAGTTTTTCCAGTGAGTGTTTTGACA 4824977 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 4824976 AAAATTTGCAT 4824966 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 ||||||||||||||||||||| | ||| |||| |||| |||||| || ||||| Sbjct 4825612 TCTTTTTGAATATTATAATCGGAAAGAGTACGACCATCTTCCAGTTGTTTACCGGCAAAG 4825553 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| | || || || |||| | |||||||||||| |||||| ||| || | Sbjct 4825552 ATCAATCTCTGTTGATCTGGAGGAATACCTTCTTTATCCTGAATTTTGGCTTTAACATTT 4825493 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| ||||||| | || || |||| ||||| || || || || | || || || Sbjct 4825492 TCAATGGTATCTGAAGCTTCAACTTCGAGAGTAATAGTCTTTCCTGTAAGGGTTTTGACG 4825433 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 4825432 AAAATTTGCAT 4825422 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||||||||||||| |||||| | ||| |||| || ||||||||||| ||||| Sbjct 4825840 TCTTTTTGAATATTGTAATCGGAAAGAGTACGACCATCTTCTAATTGTTTTCCAGCAAAG 4825781 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| | ||| ||||| |||| | ||||||||| ||| ||| || ||| || | Sbjct 4825780 ATCAATCTTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGAATCTTAGCTTTTACATTT 4825721 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| |||||| | | || || || | ||||| || || || || | || || || Sbjct 4825720 TCAATAGTATCAGAAGCTTCTACTTCAAGAGTAATAGTCTTTCCTGTAAGGGTTTTGACG 4825661 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 4825660 AAAATTTGCAT 4825650 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||||||||||||||| |||||| | ||| |||| || ||||||||||| ||||| Sbjct 4825385 CTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCATCTTCTAATTGTTTTCCAGCAAA 4825326 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 ||||| | || ||||| |||| | ||||||||| ||| ||| || ||| || | Sbjct 4825325 GATCAATCTCTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGAATCTTAGCTTTTACATT 4825266 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| ||||| | | || || || | ||||| ||||| || || | || || || Sbjct 4825265 TTCAATGGTATCAGAAGCTTCTACTTCAAGAGTAATAGTTTTTCCTGTAAGGGTTTTGAC 4825206 Query 44110 AAATATTTGCAT 44121 || |||||||| Sbjct 4825205 GAAAATTTGCAT 4825194 >seq4 Length=12718334 Score = 118 bits (130), Expect = 8e-22 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 43932 CTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATA 43991 |||||||||||||||| || ||| ||| |||| |||||||| ||||| ||||| | Sbjct 12038483 CTTTTTGAATATTATAGTCCGATAAAGTACGACCATCTTCCAATTGCTTTCCAGCAAAAA 12038542 Query 43992 TCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAG 44051 | | |||||||| || | |||| ||||||||||| |||||| ||| || | Sbjct 12038543 TAAGACGTTGCTGATCAGGTGGTATTCCTTCTTTATCCTGAATTTTAGCTTTCACATTTT 12038602 Query 44052 CAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAA 44111 | | |||||||| | || || || | || || |||||||| || ||||| ||||||| Sbjct 12038603 CTATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACAA 12038662 Query 44112 ATATTTGCAT 44121 |||| ||||| Sbjct 12038663 ATATCTGCAT 12038672 >seq1 Length=29893408 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||| | ||| || |||| ||| || || ||||| |||||||||||||| Sbjct 27604979 CCTCCTCGAAGTCTCAATACCAGATGAAGAGTAGATTCTTTCTGAATATTATAATCTGAG 27605038 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | |||| || | ||||| || ||||| ||||| |||||||| || |||| Sbjct 27605039 AGTGTTCTTCCATCTTCAAGCTGTTTGCCAGCAAAGATCAATCGTTGCTGATCAGGAGGA 27605098 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||||||| ||| || ||| || | | | || |||| | || || Sbjct 27605099 ATTCCTTCTTTATCTTGAATCTTAGCTTTAACATTCTCTATTGTGTCTGAAGCTTCAACT 27605158 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | |||||||| || || || | ||| || ||||| |||||||| Sbjct 27605159 TCTAAGGTAATTGTCTTGCCAGTGAGAGTTTTGACAAAGATTTGCAT 27605205 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||| | ||| ||||| ||||| || || || ||||| ||||||||||| | Sbjct 27605206 ACCTCCTCTAAGTCTCAACACTAAATGAAGTGTAGATTCCTTTTGGATATTATAATC-TG 27605264 Query 43954 TAATTG-ACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 || || | |||| || | |||||| || ||||| || || ||||| || || | | Sbjct 27605265 AAAGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGATCTGGTG 27605324 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | |||||||||||| ||| || || || | | | || |||| | || | Sbjct 27605325 GAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTGTCTGAAGCTTCAA 27605384 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | || || ||||| || ||||||||||| ||||| || ||||| Sbjct 27605385 CTTCTAAGGTGATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGCAT 27605433 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||| | ||| || ||||| || | || ||||| |||||||| ||||| Sbjct 27601411 CCTCCTCGAAGTCTCAATACCAAGTGCAATGTAGATTCTTTCTGAATATTGTAATCTAAG 27601470 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | |||| || | ||||||||| ||||| ||||| |||||||| || |||| Sbjct 27601471 AGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATCAGGAGGA 27601530 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||||||| ||| || || || | | | ||||| | | || || Sbjct 27601531 ATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTTTCTATGGTATCCGAAGCTTCAACT 27601590 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| ||||| || || | ||| || ||||| |||||||| Sbjct 27601591 TCAAGTGTAATAGTTTTTCCAGTAAGAGTTTTAACAAAGATTTGCAT 27601637 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||| | ||| ||||| ||||| || || || ||||| ||||||||||| Sbjct 27604750 ACCTCCTCTAAGTCTCAACACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATC--- 27604806 Query 43954 TAATTGA---CGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTG 44010 | | || | |||| || | |||||| || ||||| ||||| |||||||| || | Sbjct 27604807 TGAGAGAGTTCTTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAGCGTTGCTGATCAGG 27604866 Query 44011 AGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTC 44070 || | |||||||| ||| ||| || || || | | | || |||| | || Sbjct 27604867 GGGAATTCCTTCTTTGTCTTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCTTC 27604926 Query 44071 CACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | || || ||||| || || | ||| || ||||| |||||||| Sbjct 27604927 AACTTCAAGTGTGATAGTTTTTCCAGTAAGAGTTTTGACAAAAATTTGCAT 27604977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354754592783508