Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq15 104 2e-17 >seq15 Length=10167229 Score = 104 bits (114), Expect = 2e-17 Identities = 140/189 (74%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 ||| || ||||| || || || ||||||||||||||||| ||||||||| || | ||| Sbjct 2293312 AATGTATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTG 2293371 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTA 13538 |||||||| ||||| | ||||||| || || ||||| || | ||||| ||| | | Sbjct 2293372 AAAACCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACT-AAATCGTTCAACAA 2293430 Query 13539 AGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGC-AAG-TATGTGCTTAATAAA 13596 || || ||||| || || ||| ||| |||||||| || ||| ||| | | ||||| Sbjct 2293431 GATTCTCATTAACAATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGAT--ATAAA 2293488 Query 13597 ttttttttC 13605 | |||||| Sbjct 2293489 ATGTTTTTC 2293497 Score = 96.9 bits (106), Expect = 3e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 |||||||||||| | ||| |||||||||| |||||||| || |||||||| ||||||| Sbjct 2292496 TTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTCTTACCTTCTAAAGAAATATG 2292555 Query 12919 TTCCATAAAATCGAAAGGATTTT 12941 |||||| ||||| || ||||||| Sbjct 2292556 TTCCATGAAATCAAACGGATTTT 2292578 Score = 89.7 bits (98), Expect = 4e-13 Identities = 154/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 12956 TTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATT 13015 |||||||| |||||||||| | |||||| || |||||||| || || || || ||| Sbjct 2292664 TTTTTACAACCTAATTCTACAAGCAATCTATCTGCAACAAATTCGATATATTGACACATA 2292723 Query 13016 AAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCT 13075 | | ||| ||||| ||||| | || ||||| | || ||||| ||||| | || ||| Sbjct 2292724 AGTTTACAATTCATGCCTATCATTTCAACAGGTAATGCATCTGTCAAAAATTCTTGTTCA 2292783 Query 13076 ATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGA 13135 || | || || || ||| || | | | | ||||| | | | || ||| || | Sbjct 2292784 ATTTTGACAGCATCTTTAATAATTGATGTGACT-CGTTCACAA--GATGGTTTTTGTACA 2292840 Query 13136 ---TGCTTAAACATCATACATGCAAAATCACAGTGCAATCC 13173 || || ||||| | ||||||||||||||| || ||||| Sbjct 2292841 ATGTGTTTGAACATTAAACATGCAAAATCACAATGTAATCC 2292881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430954450926042