Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_005355.1 Length=40190 Score E Sequences producing significant alignments: (Bits) Value seq1553 120 8e-23 >seq1553 Length=1160 Score = 120 bits (132), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 1512 TAGAAGTTAATTGATCTTTAATTTCTGCTGTAGACATATTCATATCTTTTTGGTAAGTTT 1571 ||||||||||||| ||||||| | || | ||||| | |||||| || | || |||| Sbjct 1153 TAGAAGTTAATTGTTCTTTAACAGCATCTTTTGACATGTGCATATCCTTGTAATATGTTT 1094 Query 1572 TAGCACTTTCTAAAGCATTTTTATTCCAATCAG---CTTTAACATGATCAACAGCATATT 1628 ||| || || ||||||| |||||| | | |||| | | ||||| |||||| | Sbjct 1093 CAGCTGATTTCAATGCATTTTCATTCCAGTTAATATCTTTTAGGTTATCAATAGCATACT 1034 Query 1629 TTGCAGCATCTTCTGGGAATTTATCTCCAGATTTGGAAATTAGTTGATCATAAATTGCGG 1688 ||||| ||| || ||||||| | ||| | | ||| ||| ||| ||||||| || Sbjct 1033 TTGCATCATTCGCTTTGAATTTACCACCATAACTAGAAGTTAATTGTTCATAAACAGCTT 974 Query 1689 CCTTAGACATATGCATATCGTTTGCGTATGTTTCAGCGCTTCCTAAAGCA 1738 || ||||| |||||||| || || ||||||||||| | |||||||| Sbjct 973 GTTTTGACATGTGCATATCTTTGGCATATGTTTCAGCTGATGCTAAAGCA 924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128478281345904