Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq101 136 5e-27 seq8 132 6e-26 >seq101 Length=89335 Score = 136 bits (150), Expect = 5e-27 Identities = 215/305 (70%), Gaps = 6/305 (2%) Strand=Plus/Plus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||| ||||| || |||||||| | |||||| | ||| ||||||| || |||||| Sbjct 11865 ATTGGGATTTTCAAAAAATGGGAATTGGTGGATTGGATAAAGAATTTACTGCTATTTTTC 11924 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAAC 164512 || |||| ||||| || || |||| || || | | | ||||||| ||||||| Sbjct 11925 GAAGAGCCTTTGCATCACGAGTTTTTCCACCAGAGATTGTTACACAATTAGGTTGTAAAC 11984 Query 164513 ATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGAT 164572 || | |||||||||||| | |||| || || || || ||||||||||||||| || Sbjct 11985 ATGTGAAAGGAATTTTACTTTATGGTCCACCAGGAACAGGAAAAACATTAATGGCTAGAC 12044 Query 164573 GCATTGCTCAAGCTTTTAAA---TCGCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 || | | | ||||| | | || || |||||| |||||||| ||| || | | Sbjct 12045 AAATAG-GAACTATGTTAAATGCTAGAGAACC--TAAAATCGTTAATGGCCCTCAAATTT 12101 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 || | |||||||| || || ||||| ||| |||||| || ||| || ||||||| Sbjct 12102 TGGATAAATATGTTGGAGAAAGTGAAGCCAATATTAGAAGATTATTTGCTGATGCTGAAG 12161 Query 164690 AAGAA 164694 | ||| Sbjct 12162 AGGAA 12166 Score = 129 bits (142), Expect = 7e-25 Identities = 156/213 (73%), Gaps = 12/213 (6%) Strand=Plus/Plus Query 164715 TAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGT-- 164772 |||| ||||||| | ||| |||||||||| || |||||| |||| ||| || ||| Sbjct 12258 TAGTGGATTACATATAATTATTTTTGATGAAATTGATGCTATTTGTAAATCTCGAGGTAG 12317 Query 164773 -------GATAATATTA---TTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGA 164822 | ||||| |||||||| | || || ||||| || ||| | ||||| || Sbjct 12318 TGTAGCTGGTAATACAGGAGTTCATGATACTGTTGTGAATCAATTACTTGCAAAAATTGA 12377 Query 164823 TGGTGTAGAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAAT 164882 |||||||||| |||||||||||| | || | |||||||| || ||| ||| | || Sbjct 12378 TGGTGTAGAACAATTAAATAATATTCTTGTTATTGGTATGACTAATCGAAGAGATATGAT 12437 Query 164883 TGATGATGCTTTATTACGACCTGGTCGATTAGA 164915 ||||| || ||||||||||||||| ||||||| Sbjct 12438 AGATGAAGCCTTATTACGACCTGGTAGATTAGA 12470 >seq8 Length=13546544 Score = 132 bits (146), Expect = 6e-26 Identities = 172/237 (73%), Gaps = 8/237 (3%) Strand=Plus/Minus Query 7175 TATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTT 7234 |||| | || |||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 1794518 TATATGTTGCACCAAAATGTCTCCATTGAAATCCATAAATAGGACCTAAATCTCCTTCTT 1794459 Query 7235 CACGATGATTAAATCCTAATCGATTTAAATTAGATTT----TGATCCATAAGCATCCCAA 7290 | | || |||| || | || || ||| || ||| | || ||||||||| Sbjct 1794458 CTCTATCTATAAAACCACAAGAATCTA----AGAATTCACGTGAACTATTTGCATCCCAA 1794403 Query 7291 ATATGTACAGAtttttttGATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAAA 7350 ||||| ||| |||| ||| || | |||||| |||||||||| |||||||| Sbjct 1794402 ATATGAACATCCTTTTCACTTAATTTCTTTGCATTTGTGGATCCTTTAATAAACCATAAC 1794343 Query 7351 AGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAATGTA 7407 | ||| || |||| || |||||| | | ||||||||| ||||| || ||| || Sbjct 1794342 AATTCCTCCACTACACCTTTCCAAAATACGCGTTTTGTAGTTAATAATGGAAATATA 1794286 Score = 113 bits (124), Expect = 5e-20 Identities = 181/255 (71%), Gaps = 14/255 (5%) Strand=Plus/Minus Query 6898 TGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCC 6957 || || | || ||| ||||||| | |||||| || | |||||| |||||||| | ||| Sbjct 1794877 TGTGCCAGTATATAAATTAATAAAGAATAAGATGCAATATTAAATGGTACACCAAGACCC 1794818 Query 6958 ATATCTGCTGATCTTTGATAACATTGACAAGATAAAAT---ATTGTCTATAGCATAAAAT 7014 ||||| || |||||||||| ||| || ||||| |||| || |||||||| Sbjct 1794817 ATATCCGCACTTCTTTGATAAAGTTGGCATGATAATTCTTCATTGCTTA---CATAAAAT 1794761 Query 7015 TGACACAATAC-ATGACATGGAGGTAAAACAGCCTGATCT---ATATCAGATGGATTCCA 7070 ||| || | || |||||| |||||||| |||| | | |||||| ||||||||| Sbjct 1794760 TGA-ACGAAACAATGACAAGGAGGTAA---AGCCATTTTTGGAATATCAATTGGATTCCA 1794705 Query 7071 AGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAATTATTTG 7130 || ||||||| ||| | ||||||||| ||| | || || ||||| | || Sbjct 1794704 TGCTGTCATTATAATTCTTCTATCATTGGGAGAATATCGTATCTTATCTATAACTTCTTT 1794645 Query 7131 TAATTGATCTATACC 7145 ||||||||| ||||| Sbjct 1794644 TAATTGATCAATACC 1794630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595832367063600