Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq8 333 1e-86 >seq8 Length=13546544 Score = 333 bits (368), Expect = 1e-86 Identities = 435/594 (73%), Gaps = 11/594 (2%) Strand=Plus/Minus Query 3551 GCTGTAAAAATGGCAAACATTGATCATGCAACGAATTTCGTATTTACACGATTGAATG-A 3609 ||||| |||||||| || || ||| ||| ||||| | ||||| ||| ||| | Sbjct 5094901 GCTGTTAAAATGGCTAATATAGATAGAGCATGTAATTTTATGTTTACT-GATCGAAAACA 5094843 Query 3610 T---GGATCAAATGAATTGATATATTTTGCTGACGTATGCGCTGGTCCAGGTGGTTTCAG 3666 | ||| |||||| ||| |||||||||| || |||||||| || |||||||||||||| Sbjct 5094842 TTTGGGAAAAAATGAGTTGTTATATTTTGCAGATGTATGCGCCGGACCAGGTGGTTTCAG 5094783 Query 3667 TGAATATATGTTATGGAGAAAGAAATGGAATATCAAAGGTTATGGTATGACGTTACGCGa 3726 ||||||| | | ||||||| |||||| || ||||| | |||| | || || | | Sbjct 5094782 TGAATATGTTCTCTGGAGAACAAAATGGCATGCTAAAGGATTTGGTTTTACATT--GAAA 5094725 Query 3727 aa--aaaaTGATTTTCAACTGAACAGATTTT-ACGATAACTTTTCGGAAACTTTACACCC 3783 || ||||||||||| || | | | |||||| | | | | | | ||||| || || || Sbjct 5094724 AATGAAAATGATTTTAAATT-AGCTGATTTTTATGCTGGTTCTCCTGAAACATTTCATCC 5094666 Query 3784 GTATTATGGTCCGCTTAACGATGGTAATATCTACAATTCACAAAATCAGAAAGGTTTTTG 3843 |||||||| || | ||||| || ||| |||| ||||||| | | ||| | Sbjct 5094665 ATATTATGGACCAAAAGATAATGGTGATGTCTTTGATTCTGAAAATCAAAGAACATTTAG 5094606 Query 3844 TGAAATGATTATGAAAGATACCGAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTGG 3903 ||| | || |||||| |||| | ||||| ||||||||||||||| |||| ||||| Sbjct 5094605 AGAACTTATAATGAAATATACTCATAACAAAGGAGTACATTTTATGATGTCTGATGGTGG 5094546 Query 3904 GTTCTCGGTTGAGGGTCAAGAAAATATGCAAGAAATGTTATCGAAAAAGATGTATTTGTG 3963 ||||| |||||||| ||||||| | |||||||| | || ||| | ||||| | || Sbjct 5094545 TTTCTCTGTTGAGGGAAAAGAAAACTTACAAGAAATTCTTTCAAAACAATTGTATCTTTG 5094486 Query 3964 TCAATGTTTAATTGCATTGATGATCATACGAATTGGTGGTCATTGTGTTATCAAATTTTT 4023 |||||||||| | ||||| ||||| || || ||||||| ||||| ||||| || Sbjct 5094485 TCAATGTTTAGTGGCATTAATGATAGTAAGAGAGAAAGGTCATTTTGTTACAAAATTATT 5094426 Query 4024 CGATATATTTACACCTTTTAGTGCTGGTTTAGTGTATTTGATGTATAGATCTTTTAATCG 4083 || ||||||||||| ||||||||||||||| | ||||| |||||| ||| |||| | Sbjct 5094425 TGACATATTTACACCCTTTAGTGCTGGTTTAATCTATTTAATGTATCGATGTTTTGACGA 5094366 Query 4084 TATTTGTATTTTCAAACCACATTCATCGCGACCGGCCAATTCTGAAAGATATTT 4137 ||||||||||| |||||| |||| || |||| || ||||| ||| | ||||| Sbjct 5094365 AATTTGTATTTTTAAACCAAATTCTTCTAGACCAGCAAATTCAGAACGTTATTT 5094312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276535665585463