Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq16 122 5e-23 seq1 122 5e-23 seq13 116 2e-21 seq4 114 7e-21 seq11 111 8e-20 >seq16 Length=7207165 Score = 122 bits (134), Expect = 5e-23 Identities = 78/86 (91%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| || |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 1693764 AAAAAATAAATTTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 1693823 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 1693824 GCTCTAACCAACTGAGCTAATGGGCC 1693849 >seq1 Length=29893408 Score = 122 bits (134), Expect = 5e-23 Identities = 82/91 (90%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 11440 TAATAAAAAATCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||||||||| ||||| ||||||||| |||||||||| ||||||||||||||||||| Sbjct 25755346 TAATAAAAAAAAAAATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 25755405 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| ||| |||||||||||||||| Sbjct 25755406 ACGACGCTCTAACCTACTGAGCTAATGGGCC 25755436 >seq13 Length=10288499 Score = 116 bits (128), Expect = 2e-21 Identities = 78/88 (89%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| | |||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 6850450 TAAAAAAGAACTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 6850391 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||| ||||||||||||||||||||| Sbjct 6850390 CGCTCTAACCAACTGAGCTAATGGGCCG 6850363 >seq4 Length=12718334 Score = 114 bits (126), Expect = 7e-21 Identities = 76/85 (89%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 5269463 AAAAAAAAAATTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACG 5269404 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||| |||||||||||||||| Sbjct 5269403 CTCTAACCTACTGAGCTAATGGGCC 5269379 Score = 114 bits (126), Expect = 7e-21 Identities = 78/87 (90%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| |||| ||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 5294850 AAAAAAAGAAATCTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 5294791 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 5294790 CGCTCTAACCAACTGAGCTAATGGGCC 5294764 >seq11 Length=14726556 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 14445724 AAATTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAAC 14445665 Query 11512 CAACTGAGCTAATGGGCC 11529 | |||||||||||||||| Sbjct 14445664 CTACTGAGCTAATGGGCC 14445647 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261474242377396