Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1 188 1e-43 >seq1 Length=29893408 Score = 188 bits (208), Expect = 1e-43 Identities = 202/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||| | | | ||||| |||||||||||||| ||||| || ||||| || Sbjct 17332087 GCAAAGCGTCATAGAAAAGTACTTCGTGATAACATCCAAGGTATCACAAAACCAGCAATT 17332146 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| ||||||||||||| || || || ||| | ||||| || | |||||||| | | Sbjct 17332147 CGTCGATTGGCTCGTCGTGGCGGTGTTAAACGTATATCTGGTTTAATTTATGAAGAAACT 17332206 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||||||||| | ||| | | | ||||||| ||||| | || ||||| Sbjct 17332207 CGCGGTGTTTTGAAAGTTTTCTTAGAAAATGTTATCCGCGATGCAGTTACTTACACCGAA 17332266 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||||||||| || ||||| || | |||||| |||| ||||| ||||| | ||||| Sbjct 17332267 CACGCTAAACGGAAAACTGTAACGGCTATGGATGTCGTTTATGCTCTGAAAAGGCAAGGA 17332326 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| |||||||||||||| ||||| Sbjct 17332327 CGTACTCTTTATGGTTTTGGAGGTTAA 17332353 Score = 181 bits (200), Expect = 2e-41 Identities = 201/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||| | | | | || |||||||||||||| || ||||| ||||| || Sbjct 16641510 GCAAAGCGTCATAGAAAGGTTTTGCGTGATAACATCCAAGGTATTACCAAACCAGCCATT 16641569 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| |||||||||||||| || |||||| | ||||||||| |||| ||||| | Sbjct 16641570 CGTCGTCTTGCTCGTCGTGGTGGTGTGAAGCGTATTTCTGGATTGATCTACGAAGAAACA 16641629 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| |||||| | ||| | | | ||||||| |||||| || || || ||| Sbjct 16641630 CGAGGTGTATTGAAGGTATTCTTGGAAAATGTTATCCGAGATGCTGTCACTTACACTGAG 16641689 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | |||||||| || |||||||| | || || || ||||| |||||||| Sbjct 16641690 CATGCCAAGAGGAAGACTGTAACTGCCATGGATGTAGTTTACGCTTTGAAGCGTCAAGGA 16641749 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | |||| |||||||| |||||| Sbjct 16641750 AGAACCCTTTACGGTTTTGGTGGTTAAT 16641777 Score = 105 bits (116), Expect = 1e-18 Identities = 171/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||||||||| || |||||||| ||||| || ||||| || || | || | | ||| Sbjct 17326402 CTTCGAGATAATATTCAAGGAATTACCAAACCTGCTATTCGACGATTAGCAAGAAGAGGT 17326461 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||| | | ||| || | || ||||| | |||| || || || | || Sbjct 17326462 GGTGTTAAGAGAATAAGTGGTTTAATTTACGAAGAAACACGTGGAGTATTAAAAGTATTT 17326521 Query 16574 CTCAAGACCGTTATCCATGATGC-TTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| | | ||||| | ||||| || || ||||| || || |||||| | || ||||| Sbjct 17326522 CTCGAAAATGTTATTCGAGATGCAGTTACA-TATACTGAACATGCTAAAAGGAAAACTGT 17326580 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATT-TATGGTTTTG 16691 || | |||||| | || |||||||| ||||| |||||| | || ||| |||||||| | Sbjct 17326581 AACAGCAATGGATGTAGTTTATGCATTAAAACGCCAAGGCAG-AACATTATATGGTTTCG 17326639 Query 16692 G 16692 | Sbjct 17326640 G 17326640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070334972453