Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq15 105 7e-18 >seq15 Length=10167229 Score = 105 bits (116), Expect = 7e-18 Identities = 159/223 (71%), Gaps = 10/223 (4%) Strand=Plus/Plus Query 21281 TTATTACAACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATT 21340 || |||||||| | |||| | ||||||||||| |||||||| |||||||||||||| Sbjct 2292664 TTTTTACAACCTAATTCTACAAGCAATCTATCTGCAACAAATTCGATATATTGACACATA 2292723 Query 21341 AATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCT 21400 | || ||||||||| || |||| || ||||| | || | ||||||||| || ||| Sbjct 2292724 AGTTTACAATTCATGCCTATCATTTCAACAGGTAATGCATCTGTCAAAAATTCTTGTTCA 2292783 Query 21401 ATAGAGACGGCTTCAACAATTATATTTATTATCCTAGATGTACTAGGGGG-----ATACA 21455 || ||| || || ||| ||| || || | | || || || |||| Sbjct 2292784 ATTTTGACAGCATCTTTAAT--AATTGATGTGACTCG-TTCACAAGATGGTTTTTGTACA 2292840 Query 21456 ATAATTGTTTAAACATCAAACATGCAAAATCACAATGCAAACC 21498 || ||||| ||||| |||||||||||||||||||| || || Sbjct 2292841 AT--GTGTTTGAACATTAAACATGCAAAATCACAATGTAATCC 2292881 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 21769 ATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTC 21828 ||||||||| ||||| | |||||| || || | ||||| || || ||||| | |||||| Sbjct 2293336 ATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAACCATAGAAACAACGTGCCTC 2293395 Query 21829 TGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACT 21888 || ||| || || | |||||||| | | | || ||||| || ||||||||| Sbjct 2293396 TGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGATTCTCATTAACAATTCCATCAGA 2293455 Query 21889 GGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTT 21948 || ||||||||||| || | || |||||||| | ||| | | ||||| || || Sbjct 2293456 AGCTGCAAAAAATGCTAAGACATGAGATATAAAATGTTTTTCACTGGCAGTTAAATTATT 2293515 Query 21949 CCAATCTAATAAATC 21963 |||||| |||| ||| Sbjct 2293516 CCAATCAAATACATC 2293530 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 21172 CATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTC 21231 ||| | |||| ||||||||| || | ||| ||||||| || || |||||||| ||||| Sbjct 2292484 CATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTCTTACCTTC 2292543 Query 21232 CAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATAT 21279 || || ||| |||||| |||||||| ||||||||||| || |||| Sbjct 2292544 TAAAGAAATATGTTCCATGAAATCAAACGGATTTTCAGACATATATAT 2292591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531865421948040