Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq6 150 2e-31 seq15 147 3e-30 >seq6 Length=18472937 Score = 150 bits (166), Expect = 2e-31 Identities = 167/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 62244 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 62303 || || || ||| || ||| ||||| ||| || || || |||| ||| | | ||| Sbjct 6969919 TGTATAGAGCCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTCTT 6969860 Query 62304 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 62363 || |||||| ||| | | ||| ||||| || |||||||| ||||| || | ||||| Sbjct 6969859 TCAGTTAAATCTCGCAATAAATGAGGATTTACAACTTGAAACTCTCCTGATAGAACTCTT 6969800 Query 62364 CGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCA 62423 | ||||||||||| ||||| || ||||| | || ||||||||||| |||||||| || Sbjct 6969799 CTTGTGTAAATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGCT 6969740 Query 62424 GTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 62466 |||||||| || ||||||||||| | || ||| |||||||| Sbjct 6969739 GTTGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAA 6969697 Score = 127 bits (140), Expect = 3e-24 Identities = 265/391 (68%), Gaps = 14/391 (4%) Strand=Plus/Minus Query 62737 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62796 |||| |||||||||||||| ||| || || ||||||||||| ||||||||||| | Sbjct 6969272 TACCTATAGGTCTATGTCTAAAATTTGATTTTCTTGCTTCTGGAATGGGATAATAATTGA 6969213 Query 62797 TATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 62853 ||| |||||||| | ||||| | | |||||| |||| || | | ||||| Sbjct 6969212 CATCGATAATTTTGTCCAGATTACAAGTAACAATT--TTTG-TTACTTTCAGAAGTTTTT 6969156 Query 62854 GAAAATCAAATCGCCCATCTA------TTACAAACATGTTCAAGGCAACAGATGCCAGAT 62907 ||||||||||| || | |||||||||| || | |||| || || | || Sbjct 6969155 GAAAATCAAATGTTTGATTAATGGGATTTACAAACATATTAACAGCAATTGAAGCTAAAT 6969096 Query 62908 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 62967 |||| || || || |||| | | | ||| || | | || || || | |||||||| Sbjct 6969095 TACACACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTAC 6969036 Query 62968 ACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 63027 ||| || ||||||| |||||| ||||| || || || ||| |||||||| | Sbjct 6969035 TCTTTATTGTTCCTATATTTTGATGATTTGATTTGCGATTGCAGTGATCTTTATAAAGCA 6968976 Query 63028 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 63087 | ||||||| || ||||||| ||||| | ||| ||| |||| | ||| ||| | Sbjct 6968975 TATATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTAGCTT 6968916 Query 63088 TTATTATAGATTTGTATCTCCTTTCTCTTTC 63118 ||| ||| ||||| |||||| ||| Sbjct 6968915 GAATTTGTCGTTTATATCT--TTTCTCATTC 6968887 Score = 96.9 bits (106), Expect = 4e-15 Identities = 123/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 63124 GTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 63183 ||||||| | ||| || || | |||||||||| |||| |||||| |||||| | Sbjct 6968627 GTGTATAGAGAATTTCAAATTCATTGCCCCAAACATCAGCCAAACCAGGAGATTCATGTG 6968568 Query 63184 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63243 ||||||| || | ||| | | |||| |||||||||||||| |||||||| |||| Sbjct 6968567 GACACATTAAAGTCCATATATCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCC 6968508 Query 63244 AAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63289 | | ||| ||| |||| ||||| | ||||| ||| || || ||||| Sbjct 6968507 ATAAAGC-ATAGAATAATTCTCTTGCTCTATTTTCTTCTTTACCTGT 6968462 Score = 86.0 bits (94), Expect = 8e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 62571 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62630 ||| |||| || || |||| |||| | ||||| |||||||| || || || || ||| Sbjct 6969507 CCTTCATAAGTTTCATATGTACCTTTTTCTTCAGCAAGTTCACAGCTGGCTTCCAAAGCA 6969448 Query 62631 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 62690 || ||||| | ||||| || || | |||| || | ||||||||| || |||||| Sbjct 6969447 CCATAATATAGTGTTTCAAATATTTGAATATTAAGTTTTTGTGCTTCTTCACTTTCAAAT 6969388 Query 62691 GGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACC 62740 |||||| | | || ||| || || || | ||||||| |||||||| Sbjct 6969387 GGATAACGCATTAAAAGAAATGCATCTGCAAGACCTTGAATTCCAATACC 6969338 Score = 82.4 bits (90), Expect = 1e-10 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 ||||||| ||||||||||| || ||||| | || | ||| ||||| | || Sbjct 6970190 TCCATCCATAAAAATGCATTGAAGTAAGTTTTTCTGTTGTTGGTTTTGCCATATGAACAT 6970131 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 | | ||||| |||||| || || || || | ||||| |||||||||| || | | Sbjct 6970130 TTAATGATTGTGATTGATCTATAAATGCACCACGATCTGCTGCCATTTTTAAAATTATTT 6970071 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAA 62211 ||||||| |||||||||| |||||||||| Sbjct 6970070 TTTGTGGTATTTCCCAAACTGTTTTATAAA 6970041 >seq15 Length=10167229 Score = 147 bits (162), Expect = 3e-30 Identities = 159/208 (76%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 33574 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33633 || ||||| || || | | ||||||||| ||||||| ||||| ||||| | ||||| Sbjct 2293316 TATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAA 2293375 Query 33634 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTT 33693 || |||||||| | ||||| || || ||||||||| || ||||||||| | | ||| Sbjct 2293376 CCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGATTC 2293435 Query 33694 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 33753 ||||| || ||||| ||| ||||||||||| || || ||||| |||||||| |||| Sbjct 2293436 TCATTAACAATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATATAAAATGTTTT 2293495 Query 33754 TCGTCTGG-TGTTAGTTTATTCCAATCA 33780 || |||| |||| |||||||||||| Sbjct 2293496 TC-ACTGGCAGTTAAATTATTCCAATCA 2293522 Score = 100 bits (110), Expect = 4e-16 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 33100 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATAT 33159 ||| ||| |||||| | || ||||| || ||||||||| || || ||||| |||||| Sbjct 2292655 TTACAAACCTTTTTACAACCTAATTCTACAAGCAATCTATCTGCAACAAATTCGATATAT 2292714 Query 33160 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAAT 33219 ||| | || ||||||||| ||||| | || ||| || | || | || | |||| Sbjct 2292715 TGACACATAAGTTTACAATTCATGCCTATCATTTCAACAGGTAATGCATCTGTCAAAAAT 2292774 Query 33220 TCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGG- 33278 ||||||||||| || |||||| | ||||| ||| | || | ||||| | ||| Sbjct 2292775 TCTTGTTCAATTTTGACAGCATCTTTAATAATTGATGTGAC---TCGTTCACAAGATGGT 2292831 Query 33279 --ATGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 33328 || | | ||||| ||||| |||||||| ||||| || || | |||| Sbjct 2292832 TTTTGTACAATGTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 2292883 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 33788 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGT 33847 ||||||| | ||| |||||||| ||||||||||| ||||| || || ||||||||||| | Sbjct 2293605 CTTTAGAAAGATCCACTTCTTCTACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTT 2293664 Query 33848 TCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897 ||| || ||| | || || || |||| |||||||||| ||||||| Sbjct 2293665 GCCAAATATCAGGCCACTGAATAGGAAAAACAACAAATCTACGTGGATTT 2293714 Score = 93.3 bits (102), Expect = 5e-14 Identities = 153/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| |||||| ||| || || ||| ||| || ||||| ||||| || || | ||||| Sbjct 2292988 CCTCATCTCTAGAAATAAGCTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTCTTTT 2293047 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | ||| || || | || || ||| |||||| || ||||||||||||||||| | Sbjct 2293048 TTAACCAGAAAATAGCGGCAAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 2293107 Query 33446 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGG 33502 ||| | | || | || || || ||||| |||||| ||| ||||||| | Sbjct 2293108 CAACTACACGTTCAGGAAAAGTAGCACTTTCATGATTTATCCAATTTAACGCCCAATGAG 2293167 Query 33503 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33542 | || ||| ||||| |||| |||| || |||||||| Sbjct 2293168 CTTTTTTTGCAACACATGGCAAATTTTCAATAGCATTAAA 2293207 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 ||| |||||| |||||| ||||| ||||| |||||| || || || || || ||||| Sbjct 2292484 CATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTCTTACCTTC 2292543 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATT 33092 || || |||| ||||||||||||||||||||| Sbjct 2292544 TAAAGAAATATGTTCCATGAAATCAAACGGATT 2292576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622905766224360