Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq8 114 3e-20 >seq8 Length=13546544 Score = 114 bits (126), Expect = 3e-20 Identities = 162/224 (72%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGG 111374 |||||| | | || ||||| || || |||||| || | || || ||| | | ||| Sbjct 1794290 TTTCCATTATTAACTACAAAACGCGTATTTTGGAAAGGTGTAGTGGAGGAATTGTTATGG 1794349 Query 111375 TTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAA--ATGTAAAAATTTGGG 111432 |||||| ||| ||||||||||| ||| || || |||| |||| | ||||||| Sbjct 1794350 TTTATTAAAGGATCCACAAATGCAAA-GAAATT-AAGTGAAAAGGATGTTCATATTTGGG 1794407 Query 111433 ATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAAGAAGGTG 111492 ||| |||| | |||||||| || ||||||| |||| || | || | |||||||| | Sbjct 1794408 ATGCAAATAGTTCACGTGAATTCTTAGATTCTTGTGGTTTTATAGATAGAGAAGAAGGAG 1794467 Query 111493 ATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCA 111536 || | || || |||| |||||||||||| | || ||||||||| Sbjct 1794468 ATTTAGGTCCTATTTATGGATTTCAATGGAGACATTTTGGTGCA 1794511 Score = 84.2 bits (92), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 111633 ATTATTATGAGTGCATGGAACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCAT 111692 ||||| |||| |||||||| |||| || | ||||||||| | || || |||||| Sbjct 1794690 ATTATAATGACAGCATGGAATCCAATTGATATTCCAAAAATGGCTTTACCTCCTTGTCAT 1794749 Query 111693 CTTATGTGCCAGTTTTATGTACACGACG--GGATGCTTTCATGCCAAATGTATCAGCGAT 111750 | | || ||||||||| | | | | || | ||||||||| | ||||| || Sbjct 1794750 TGTTTCGTTCAATTTTATGTAAGCAATGAAGAAT--TATCATGCCAACTTTATCAAAGAA 1794807 Query 111751 CTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCT 111810 ||| ||||| ||||||||||| || |||||||||||| ||| | || | | || Sbjct 1794808 GTGCGGATATGGGTCTTGGTGTACCATTTAATATTGCATCTTATTCTTTATTAATTTATA 1794867 Query 111811 TAATCGCTCATTTTACAAA 111829 || | || ||| ||||||| Sbjct 1794868 TACTGGCACATATTACAAA 1794886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303264743461022