Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1 86.0 6e-12 seq6 84.2 2e-11 >seq1 Length=29893408 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081 || |||||| || | || || || || |||||||| ||||| | || | || Sbjct 27604537 CAACACTAAGTGAAGTGTGGATTCTTTCTGAATGTTATAATCTGAAAGAGTTCTTCCATC 27604596 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 |||| || || || || |||||||||| || || || ||||| |||||||||||||| Sbjct 27604597 TTCTAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCAGGAGGAATTCCTTCTTTGTC 27604656 Query 131142 GGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGG 131200 ||| | | |||| | | | ||| | ||||| | | || | || | ||||| || Sbjct 27604657 -TTGAATCTTAGCTTTAACATTCTCTATTGTATCTGAAGCTTCAACTTCTAAGGTAATGG 27604715 Query 131201 TTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||||| || |||||||| || || || ||||| Sbjct 27604716 TTTTACCAGTGAGAGTTTTGACAAAGATTTGCAT 27604749 >seq6 Length=18472937 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||| || | ||| | || ||||| |||||||| ||||||||| Sbjct 4826560 CCACCACGAAGTCGCAAAACAAGATGAAGTGTAGACTCTTTTTGAATATTGTAATCGGAA 4826501 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| || || || || || ||||||| | ||| || || || || Sbjct 4826500 AGAGTACGACCATCCTCCAGTTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGGGGA 4826441 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| ||| || || | | || | ||||||| | || | Sbjct 4826440 ATACCTTCTTTGTC-TTGAATTTTGGCTTTCACATTTTCAATGGTATCGGAAGCTTCTAC 4826382 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || || || |||||||| |||||||| ||||| Sbjct 4826381 TTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTGACGAAAATTTGCAT 4826334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471981405248640