Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq15 165 9e-36 seq1 120 3e-22 seq6 118 1e-21 seq2 114 1e-20 >seq15 Length=10167229 Score = 165 bits (182), Expect = 9e-36 Identities = 148/186 (80%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||||||||| ||||||| |||||||||||| ||||| ||||| ||||| |||| ||| Sbjct 2293313 ATGTATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGA 2293372 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || |||||||| | || || || || || ||||||||| ||||| || || ||| Sbjct 2293373 AAACCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGA 2293432 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || ||||| || || ||||| || ||||||||||| || || | ||| |||||||||| Sbjct 2293433 TTCTCATTAACAATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATATAAAATGT 2293492 Query 93542 TTCTCA 93547 || ||| Sbjct 2293493 TTTTCA 2293498 Score = 114 bits (126), Expect = 1e-20 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 93116 TCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTG 93175 || |||| || || | ||||||||| ||||| | ||||| | || |||| || || Sbjct 2292990 TCATCTCTAGAAATAAGCTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTCTTTTTT 2293049 Query 93176 AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCC 93235 | ||| || || | |||||||||||| ||| || |||||||| || || ||||| || Sbjct 2293050 AACCAGAAAATAGCGGCAAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAGCA 2293109 Query 93236 ACAATACGTTCGGCAAAATTTGCGGAATTAC-TG-CTGATCCATTTTAAAGCCCAATCGG 93293 || | |||||| | |||| | || | || | || | ||||| ||||| ||||||| | Sbjct 2293110 ACTACACGTTCAGGAAAAGTAGC--ACTTTCATGATTTATCCAATTTAACGCCCAATGAG 2293167 Query 93294 CTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 ||||||| || ||| || | |||| ||||| ||||||| | | |||| Sbjct 2293168 CTTTTTTTGCAACACATGGCAAATTTTCAATAGCATTAAATAAGAAGTCTC 2293218 >seq1 Length=29893408 Score = 120 bits (132), Expect = 3e-22 Identities = 84/95 (88%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 || ||||||||||||| |||||||||||||||| ||||| |||||||||| | |||||| Sbjct 28799602 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCAATTGGGAGC 28799543 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||||||||||||||| |||| | || || Sbjct 28799542 GTGGGTTCGAACCCCACACCTGGCAAAATTTTTTT 28799508 >seq6 Length=18472937 Score = 118 bits (130), Expect = 1e-21 Identities = 79/87 (91%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 || ||||||||||||| |||||||||||||||| ||||| |||||||||| | |||||| Sbjct 16176294 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCGATTGGGAGC 16176235 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||| |||| Sbjct 16176234 GTGGGTTCGAACCCCACACCTGGCAAA 16176208 Score = 118 bits (130), Expect = 1e-21 Identities = 79/87 (91%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 || ||||||||||||| |||||||||||||||| ||||| |||||||||| | |||||| Sbjct 18058275 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCGATTGGGAGC 18058334 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||| |||| Sbjct 18058335 GTGGGTTCGAACCCCACACCTGGCAAA 18058361 >seq2 Length=15549267 Score = 114 bits (126), Expect = 1e-20 Identities = 76/83 (92%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC-GGGAGCGTGGG 126327 |||||||||||| |||||||||||||||| ||||| |||||||||||| ||||||||||| Sbjct 9117382 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCTCTGGGAGCGTGGG 9117441 Query 126328 TTCGAACCCCACACCTGACAAAT 126350 |||||||||||||| | ||||| Sbjct 9117442 TTCGAACCCCACACTTAGCAAAT 9117464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556823761796040