Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_009904.1 Length=142072 Score E Sequences producing significant alignments: (Bits) Value seq3915 113 4e-20 >seq3915 Length=982 Score = 113 bits (124), Expect = 4e-20 Identities = 314/469 (67%), Gaps = 11/469 (2%) Strand=Plus/Minus Query 133409 TCTACCTGCATTTAAAAAAGTAGGGGTTGCAGGTTGGTATCTACGGTTAATTAGCTCATC 133468 ||| || ||||||| |||| |||||| || ||||||||||| ||| || | ||||| Sbjct 821 TCTTCCGGCATTTAGGAAAGAAGGGGTGGCTGGTTGGTATCTTTGGTGAACAATTTCATC 762 Query 133469 TGCAATCTTCATAGCAAGCTCTTCGTCACCATCACCCATTGTGAGTGCATTAAACGCTAC 133528 ||| | ||||||||||| ||||| ||||||||| | | ||||| || | || || Sbjct 761 TGCTAAGTTCATAGCAAGTTCTTCATCACCATCAGCAAAGTATAGTGCGTTGATAGCAAC 702 Query 133529 TCTATCTTCATAACGCTCTAGGTA-TCGTTCCCCATCATCTGTTTTCATTGCGTATTGTT 133587 | ||| | | |||||||| | ||| |||||||| || || | |||||||| Sbjct 701 ACGATCGATGAATTGTTCTAGGTAGTAGTT-ACCATCATCAGTCTTTAGGGCGTATTGAG 643 Query 133588 TATAGAAACGGTAAGCCCCCATAAATGTGTCGAATCTGAACTTTTTACTATAGATGAACT 133647 |||||| ||| || ||||||| | | ||| | || |||| ||| | | | | | Sbjct 642 CATAGAATTTGTATGCAGCCATAAAAGATTTGAACTTAAAGTTTTGACTTTCCAAGTAGT 583 Query 133648 TAAATAAtttttttATAAATTCCATTGAGTACTTGTCAGTAATTACTGTCTTATCAATGT 133707 | | ||||| |||||| | || |||| | | | || ||| |||| || Sbjct 582 CGTAGATTTTTTCAATAAATGAAAAGTCATATTTGTTGATGAATTCT-TCT--TCAAGGT 526 Query 133708 -ATCCTTCTCGAATTAGATAA-CTAATTTTCTCCTCTAAAGAGTAGAAAAATACTGTGTT 133765 ||| || ||| |||||| || | |||||| || | || ||| ||| | | | | Sbjct 525 AATCATTATCG-ATTAGAAAATCGAATTTT-TCTTTTAGAGA-ACCAAACTTTTTAAGGT 469 Query 133766 CTTGTT-TACATGTTCTAAAAAGAATGCTCTAACAGCTTCTTTATCTTTGTCTAACTGAA 133824 ||| |||| |||| | ||| ||| || |||||||||||||| | ||| |||| Sbjct 468 TAGGTTCAACATTTTCTTTGATGAAGGCTTCAAGCGCTTCTTTATCTTTATTTAATTGAA 409 Query 133825 TCTTTCCGTTATTAGGGATATTCAATTGGTTATTAAGCTCAATATATGT 133873 |||| | | |||||||| || | || ||||| || || |||||| Sbjct 408 TCTTATCATCCTTAGGGATGTTAATTTCATTATTTAGGTCGTAATATGT 360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 454472169909120