Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 seq9 104 3e-17 seq8 104 3e-17 seq50 100 3e-16 seq10 87.8 2e-12 seq4 87.8 2e-12 >seq6 Length=18472937 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| |||||||| || ||||| ||||| || ||||||||||| ||||| | Sbjct 4826104 CCACCTCTCAAACGCAATACTAAATGTAATGTTGATTCTTTTTGAATATTATAATCCGAA 4826045 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || ||||| |||||||| || || | || |||||| || | || Sbjct 4826044 AGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGAGGA 4825985 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGC-GTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||| | | ||| |||| |||| | | | | | || ||| | ||| || Sbjct 4825984 ATACCCTCCTTAT-CTTGAATTTTAGTTTTAACATTTTCGATAGTATCGGATGCTTCAAC 4825926 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||||||||| || || || ||||| || || |||||||| Sbjct 4825925 CTCCAAAGTGATGGTTTTTCCGGTAAGAGTCTTAACGAAAATTTGCAT 4825878 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||||| |||||||| || ||||| | ||| || ||||||||||||||||| | Sbjct 4826332 CCTCCTCGCAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTGTAATCCGAA 4826273 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || || || |||||||| || || | || |||||| || | || Sbjct 4826272 AGTGTACGACCATCTTCCAGTTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGAGGG 4826213 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGC-GTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||| | | ||| |||| |||| | | | | | || ||| | ||| || Sbjct 4826212 ATACCCTCCTTAT-CTTGAATTTTAGTTTTAACATTTTCAATAGTATCGGATGCTTCAAC 4826154 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | ||||||||||| || || || || || || || ||||||||| Sbjct 4826153 CTCCAAAGTGATGGTTTTTCCGGTAAGAGTTTTGACGAAAATTTGCATT 4826105 >seq9 Length=11120453 Score = 104 bits (114), Expect = 3e-17 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| |||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 1513306 AAAAAAATTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1513247 Query 57058 TCACCACTATACTACCGAGGATTGAATATATA 57089 | ||||||||||||||||||| | |||| || Sbjct 1513246 TGACCACTATACTACCGAGGAATCTATATGTA 1513215 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/84 (86%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 56998 AAAAATTT-TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||| | ||||| || | | |||||||||| ||||||||||||||||||||| ||| Sbjct 4449742 AAAAATATATCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 4449683 Query 57057 CTCACCACTATACTACCGAGGATT 57080 || |||||||||||| |||||||| Sbjct 4449682 CTAACCACTATACTAACGAGGATT 4449659 >seq8 Length=13546544 Score = 104 bits (114), Expect = 3e-17 Identities = 74/84 (88%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 56997 GAAAAAT--TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 ||||||| ||||||| |||| | |||||||||| ||||||||||||||||||||| | Sbjct 6120325 GAAAAATAATTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 6120266 Query 57055 TACTCACCACTATACTACCGAGGA 57078 |||| ||||||||||||||||||| Sbjct 6120265 TACTAACCACTATACTACCGAGGA 6120242 Score = 102 bits (112), Expect = 9e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 56997 GAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||||||| |||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 8385454 GAAAAATAAACTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 8385513 Query 57057 CTCACCACTATACTACCGAGGATT 57080 || ||||||||||||||||||||| Sbjct 8385514 CTGACCACTATACTACCGAGGATT 8385537 Score = 96.9 bits (106), Expect = 4e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| ||| ||||| || | | |||||||||| ||||||||||||||||||||| |||| Sbjct 8384654 AAATATTCTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 8384713 Query 57058 TCACCACTATACTACCGAGGATT 57080 | |||||||||||| |||||||| Sbjct 8384714 TAACCACTATACTAACGAGGATT 8384736 >seq50 Length=137298 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| |||| | |||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 46725 TTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 46666 Query 57064 CTATACTACCGAGGA 57078 ||||||||||||||| Sbjct 46665 CTATACTACCGAGGA 46651 >seq10 Length=12965953 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 ||| |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 12839466 TTTACTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACC 12839407 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 12839406 ACTATACTATCGAGGA 12839391 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 9853460 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 9853401 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 9853400 TACTATCGAGGA 9853389 >seq4 Length=12718334 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 || ||| ||||| || | | |||||||||| ||||||||||||||||||||| |||| Sbjct 5288505 AATAATGATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 5288446 Query 57058 TCACCACTATACTACCGAGGA 57078 | |||||||||||| |||||| Sbjct 5288445 TGACCACTATACTATCGAGGA 5288425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543176669558640