Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_010811.2 Length=231255 Score E Sequences producing significant alignments: (Bits) Value seq3431 159 5e-34 >seq3431 Length=1311 Score = 159 bits (176), Expect = 5e-34 Identities = 434/639 (68%), Gaps = 23/639 (4%) Strand=Plus/Minus Query 41469 CGCGCGGTGTGGGCAACATCATCGGCCGTCACTACATCGAGCGTGCGCAGAAGGAG-TGC 41527 ||||||| || |||||| ||||||| || |||||| | ||| || |||| ||| Sbjct 1311 CGCGCGGCGTCGGCAACGCCATCGGCACCTTCTTCATCGAACTGGCGAAGCAGGACATGC 1252 Query 41528 GGCATGTGGCACAGCAGCCTGCCGCACAACGATCTCGCGTTCTTCCCTGAGGACACTCCG 41587 | || |||||||| || |||||| | | || ||||| | ||||| || | || || Sbjct 1251 G-CAAGTGGCACATCAACCTGCCCGATCAGGACCTCGCCTATTTCCCGGAAGGGAC--CG 1195 Query 41588 GGC--TTCAATCACTACGTCCTGTCCATGCTGTGGGCGCAGGACTTCGCTCGGCAGAATC 41645 | ||| | | || ||| | | | ||||||||||||| || || || | Sbjct 1194 ACCATTTCGACGATTATGTCGAGGCGGTCGGCTGGGCGCAGGACTATGCCGCGCTCAACC 1135 Query 41646 GTGCGG-TGATGTTGCAGATCGTGATCCAAGCGCTGCGTCGTCATCT-GCCG-GCC-TTC 41701 | |||| ||||| || | ||| ||| || ||||| | || | ||| ||| ||| Sbjct 1134 G-GCGGATGATGATGACCAACGTCATCGCCGCCCTGCGCGGGCAGATCGCCAAGCCGTTC 1076 Query 41702 GA-GCTGA-CGGAAGAGGCGGTGAACTGCCACCACAACTATTGTGA-GCAGGAGAACCAC 41758 || || || | | ||||| ||||||||||||||||||||| |||| || |||||||| Sbjct 1075 GACGCGGAACTG--GAGGCAGTGAACTGCCACCACAACTAT-GTGACGCGCGAGAACCAT 1019 Query 41759 TTCGGGCGCAACGTGTGGGTCACGCGCAAGGGTGCGGTTCGTGCACGTGAAGACGATCTG 41818 ||||| || ||| |||||| |||||||| ||||| || || | | || ||| Sbjct 1018 TTCGGCGAGAATGTGCTGGTCACCCGCAAGGGGGCGGTGCGCGCGGCCAAGGGCGTGCTG 959 Query 41819 GGGATCATTCCGGGATCCATGGGTACGAAGTCGTACATCGT-CAAGGGCAAGGGCAATCC 41877 |||||||| ||||| |||||||| | ||||||| |||||| | |||| ||||| || Sbjct 958 GGGATCATCCCGGGTTCCATGGGCGCCAAGTCGTTCATCGTGCGCGGGC-TCGGCAACCC 900 Query 41878 GCATTCGTACTGCTCGTGCAGTCACGGGGCAGGACGCCGTATGTCGCGCACCGAGGCCGT 41937 | | |||| | | ||||| ||||| || || ||| ||||| ||||||| |||| Sbjct 899 GGACTCGTTCGACAGCTGCAGCCACGGCGCGGGGCGCGTGATGTCCCGCACCGCGGCCAA 840 Query 41938 CAAGCGATTCACCGTCGAAGA-CCTCGTGCAGCAGACGCAGGGTGTTGAATGCC-CGAAG 41995 |||| | || |||| || | | || | | ||| ||| || | |||| | | | Sbjct 839 GAAGCTGGTGACGCTCGACGAGCATATCGCCG-ACACGGCGGGCGTCGCCTGCCGCAAGG 781 Query 41996 ACCAAGGAAGTGCTGGATGAAATCCCGGCCGCGTACAAGGACATCGATCAGGTGATGCTT 42055 || |||| ||| | || || | || || || ||| ||||| |||||| | Sbjct 780 ACGAAGG-CGTGATCGACGAGACGCCCAGGGCCTATAAGCCGATCGAAGCCGTGATGGCT 722 Query 42056 GACCAAAGCGATCTGGTGGAAGTCGTTCATACGCTGAAG 42094 | ||| |||||||||||| |||| || ||| ||||| Sbjct 721 GCCCAGGCCGATCTGGTGGAGATCGTCCACACGTTGAAG 683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739838788199400