Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq6 116 4e-21 seq1 84.2 2e-11 >seq6 Length=18472937 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||||||||||||| |||||||||| |||| || |||||||| ||||| || Sbjct 4826332 CCTCCTCGCAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTGTAATCCGAA 4826273 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || ||||||||||| | | | || | | ||| || || ||||| Sbjct 4826272 AGTGTACGACCATCTTCCAGTTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGAGGG 4826213 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || || || ||| |||| ||||||| | ||| | || |||| | || || Sbjct 4826212 ATACCCTCCTTATC-TTGAATTTTAGTTTTAACATTTTCAATAGTATCGGATGCTTCAAC 4826154 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||||| || || |||||||| || ||||| ||||| Sbjct 4826153 CTCCAAAGTGATGGTTTTTCCGGTAAGAGTTTTGACGAAAATTTGCAT 4826106 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||||||| | ||| | | || || |||||||| ||||| ||| | |||||| Sbjct 4825180 CGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCA 4825121 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || ||||||||||||| | |||||| | |||||| || ||||| ||||||||||| Sbjct 4825120 TCTTCCAGTTGTTTACCGGCAAAGATTAATCTCTGTTGATCAGGAGGAATACCTTCTTTA 4825061 Query 138520 TCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || ||| |||| | ||||| | ||| | || || | | || || || | || | Sbjct 4825060 TC-CTGAATTTTGGCTTTAACATTTTCAATAGTATCTGAAGCTTCAACTTCTAAAGTAAT 4825002 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| ||||| || ||||| |||||||| ||||| Sbjct 4825001 AGTTTTTCCAGTGAGTGTTTTGACAAAAATTTGCAT 4824966 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||||||| | ||| | | ||||| |||||||| ||||| ||| | |||||| Sbjct 4826548 CGCAAAACAAGATGAAGTGTAGACTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCA 4826489 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 ||||| ||||||||||| | | |||||| | |||||| || || || |||||||||||| Sbjct 4826488 TCCTCCAGTTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGGGGAATACCTTCTTTG 4826429 Query 138520 TCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || ||| |||| | ||| | | ||| | ||| |||| | || || || | || | Sbjct 4826428 TC-TTGAATTTTGGCTTTCACATTTTCAATGGTATCGGAAGCTTCTACTTCAAGAGTAAT 4826370 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || || |||||||| || ||||| ||||| Sbjct 4826369 AGTCTTTCCTGTAAGAGTTTTGACGAAAATTTGCAT 4826334 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||||||| | ||| | | || || |||||||| ||||| ||| | |||||| Sbjct 4824952 CGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCA 4824893 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || || |||||||||| | |||| | | |||||| || ||||| ||||||||||| Sbjct 4824892 TCTTCCAGCTGTTTACCGGCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTA 4824833 Query 138520 TCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || ||| |||| | ||||| | ||| | || || | | || || || | || | Sbjct 4824832 TC-CTGAATTTTAGCTTTAACATTTTCAATAGTATCTGAAGCTTCAACTTCTAAAGTAAT 4824774 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| ||||| || ||||| |||||||| ||||| Sbjct 4824773 AGTTTTTCCAGTGAGTGTTTTGACAAAAATTTGCAT 4824738 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||||||| | ||| | | ||||| |||||||| ||||| ||| | |||||| Sbjct 4825408 CGCAAAACAAGATGAAGTGTAGACTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCA 4825349 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || | |||||| || | | |||| | | ||||||||| ||||| |||||||||||| Sbjct 4825348 TCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATACCTTCTTTG 4825289 Query 138520 TCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || ||| | || | ||||| | ||| | ||| || | | || || || | || | Sbjct 4825288 TC-TTGAATCTTAGCTTTTACATTTTCAATGGTATCAGAAGCTTCTACTTCAAGAGTAAT 4825230 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || || || ||||| || ||||| ||||| Sbjct 4825229 AGTTTTTCCTGTAAGGGTTTTGACGAAAATTTGCAT 4825194 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 ||| | ||| | | | || || |||||||| || || ||| | |||||| || || Sbjct 4825631 AACGAGATGAAGGGTCGATTCTTTTTGAATATTATAATCGGAAAGAGTACGACCATCTTC 4825572 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 ||||||||||||| | |||| | | |||||| || ||||| ||||||||||| || | Sbjct 4825571 CAGTTGTTTACCGGCAAAGATCAATCTCTGTTGATCTGGAGGAATACCTTCTTTATC-CT 4825513 Query 138525 GATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583 || |||| | ||||| | ||| | ||| || | | || || |||| || | || | Sbjct 4825512 GAATTTTGGCTTTAACATTTTCAATGGTATCTGAAGCTTCAACTTCGAGAGTAATAGTCT 4825453 Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || || || ||||| || ||||| ||||| Sbjct 4825452 TTCCTGTAAGGGTTTTGACGAAAATTTGCAT 4825422 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || |||||||| || || ||| | ||||| || || || |||||||| | | Sbjct 4826755 GATTCTTTTTGAATATTATAATCGGAAAGTGTACGACCATCTTCCAGCTGTTTACCAGCA 4826696 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 | || | | |||||| || ||||| |||||||||||||| ||| |||||| ||||| Sbjct 4826695 AAAATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTC-TTGAATTTTTGCTTTTAC 4826637 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | ||||| | | || || || | || | |||||||| || ||||| || Sbjct 4826636 ATTTTCAATTGTGTCAGAAGCTTCAACTTCAAGAGTAATAGTTTTACCCGTGAGAGTCTT 4826577 Query 138600 TACAAAAATCTGCAT 138614 |||||||| ||||| Sbjct 4826576 GACAAAAATTTGCAT 4826562 >seq1 Length=29893408 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | | ||| ||||| || | | || || || |||||||| || || Sbjct 27604523 CCCCCTCGAAGTCTCAACACTAAGTGAAGTGTGGATTCTTTCTGAATGTTATAATCTGAA 27604582 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | || || | ||||||||| | | |||||| ||| ||||| || ||||| Sbjct 27604583 AGAGTTCTTCCATCTTCTAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCAGGAGGA 27604642 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| | || | ||||| | || | || || | | || || Sbjct 27604643 ATTCCTTCTTTGTC-TTGAATCTTAGCTTTAACATTCTCTATTGTATCTGAAGCTTCAAC 27604701 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||||||||| |||||||| ||||| || ||||| Sbjct 27604702 TTCTAAGGTAATGGTTTTACCAGTGAGAGTTTTGACAAAGATTTGCAT 27604749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496229392347120