Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq6 82.4 9e-11 >seq6 Length=18472937 Score = 82.4 bits (90), Expect = 9e-11 Identities = 233/350 (67%), Gaps = 6/350 (2%) Strand=Plus/Minus Query 116272 CCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCAC-GGGATAAAAATTCCT 116330 || || || | |||||| | ||| || |||| || ||| | ||||||| |||| Sbjct 6969270 CCTATAGGTCTATGTCTAAAATTTGATTTTCTTGCT-TCTGGAATGGGATAATAATTGAC 6969212 Query 116331 ATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA-TTTCATGAAGCTTTTCGT 116389 |||||||| | | ||||| || |||| ||||| | ||||| |||| |||| Sbjct 6969211 ATCGATAATTTTGTCCAGATTACAAGTAACAATTTTTGTTACTTTCA-GAAGTTTTTGAA 6969153 Query 116390 AATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTAC 116449 ||||||| | || | ||| ||| || || || || ||||| || | ||||| Sbjct 6969152 AATCAAATGTTTGATTAATGGGATTTACAAACATATTAACAGCAATTGAAGCTAAATTAC 6969093 Query 116450 ACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCT 116509 |||||| ||||| | | |||| | || ||| ||||| ||||| ||||| Sbjct 6969092 ACACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTACTCT 6969033 Query 116510 TAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG-TTACACGCATCCTTGTAGAGCATA 116568 | || || || | || | |||||||| |||| | || || ||| || || |||||| Sbjct 6969032 TTATTGTTCCTATATTTTGATGATTTGA-TTTGCGATTGCAGTGATCTTTATAAAGCATA 6968974 Query 116569 TATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATC 116618 ||||| || || || || ||| || | |||||||| |||||| ||| Sbjct 6968973 TATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATC 6968924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613466394102360