Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1 123 6e-23 seq6 113 1e-19 seq4 113 1e-19 >seq1 Length=29893408 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || || || ||||| || || || || | ||||| || | | || Sbjct 27601645 CGAAGTCTCAATACCAGATGAAGAGTAGATTCTTTCTGAATATTGTAATCTGAGAGTGTT 27601704 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||||||||| ||||| ||||| || ||||| | || ||||| || ||| ||||||| Sbjct 27601705 CTTCCATCTTCAAGCTGTTTTCCAGCAAAGATCAATCGTTGCTGATCAGGAGGAATTCCT 27601764 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || |||||||| || ||| ||| | || |||| | ||| || || | Sbjct 27601765 TCTTTGTCTTGAATCTTAGCTTTTACGTTTTCTATTGTATCTGAAGCTTCAACTTCAAGA 27601824 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || |||||||| ||||||||||| Sbjct 27601825 GTGATAGTTTTCCCAGTTAGAGTTTTGACAAAAATTTG 27601862 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || |||||||| || | ||||| || || |||||||||| || || || | | ||| Sbjct 27604756 TCTAAGTCTCAACACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAGAGAGT 27604815 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||||||||||| || || || || || ||||| | || ||||| || || |||||| Sbjct 27604816 TCTTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAGCGTTGCTGATCAGGGGGAATTCC 27604875 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || |||||||| ||| || ||| | ||||||| | ||| || || | Sbjct 27604876 TTCTTTGTCTTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAG 27604935 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || |||||||| ||||||||||| Sbjct 27604936 TGTGATAGTTTTTCCAGTAAGAGTTTTGACAAAAATTTG 27604974 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||||||||||| || || || ||||| || || || || | ||||| || | | || Sbjct 27602328 TCGAAGTCTCAATACCAGATGAAGAGTAGATTCTTTCTGAATATTGTAATCTGAGAGTGT 27602387 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||||||||||| | || || || || ||||| | ||| || || || ||| |||||| Sbjct 27602388 TCTTCCATCTTCTAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCAGGAGGAATTCC 27602447 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || |||||||| ||| ||| ||| | || |||| | ||| || || | Sbjct 27602448 TTCTTTGTCTTGAATCTTAGCCTTTACGTTTTCTATTGTATCTGAAGCTTCAACTTCAAG 27602507 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || |||||||| ||||||||||| Sbjct 27602508 AGTGATAGTTTTCCCAGTTAGAGTTTTGACAAAAATTTG 27602546 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||||||||||| || || || ||||| || || || || | || || || | | || Sbjct 27604984 TCGAAGTCTCAATACCAGATGAAGAGTAGATTCTTTCTGAATATTATAATCTGAGAGTGT 27605043 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||||||||||| ||||| || || || ||||| | || ||||| || ||| |||||| Sbjct 27605044 TCTTCCATCTTCAAGCTGTTTGCCAGCAAAGATCAATCGTTGCTGATCAGGAGGAATTCC 27605103 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || |||||||| || || || | ||||||| | ||| || || || Sbjct 27605104 TTCTTTATCTTGAATCTTAGCTTTAACATTCTCTATTGTGTCTGAAGCTTCAACTTCTAA 27605163 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||||||||| ||||| ||||| Sbjct 27605164 GGTAATTGTCTTGCCAGTGAGAGTTTTGACAAAGATTTG 27605202 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||||||||| | || || || ||||| || || || || | ||||| || | | || Sbjct 27602556 TCGAAGTCTTAATACCAGATGAAGAGTAGATTCTTTCTGAATATTGTAATCTGAGAGTGT 27602615 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||||||||||| ||||| ||||| || || || | ||| || || || ||| |||||| Sbjct 27602616 TCTTCCATCTTCAAGCTGTTTTCCAGCAAAAATCAAACGTTGTTGATCAGGAGGAATTCC 27602675 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || |||||||| || ||| || | || |||| | ||| || || | Sbjct 27602676 TTCTTTGTCTTGAATCTTAGCTTTTACGTTCTCTATTGTATCTGAAGCTTCAACTTCAAG 27602735 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || |||||||| ||||||||||| Sbjct 27602736 AGTGATAGTTTTCCCAGTAAGAGTTTTAACAAAAATTTG 27602774 Score = 107 bits (118), Expect = 5e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||||||||||| || | ||| || || || || || || | ||| || || | | ||| Sbjct 27604528 TCGAAGTCTCAACACTAAGTGAAGTGTGGATTCTTTCTGAATGTTATAATCTGAAAGAGT 27604587 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||||||||||| | || || || || ||||| | ||| || || || ||| |||||| Sbjct 27604588 TCTTCCATCTTCTAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCAGGAGGAATTCC 27604647 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || |||||||| || || || | || |||| | ||| || || || Sbjct 27604648 TTCTTTGTCTTGAATCTTAGCTTTAACATTCTCTATTGTATCTGAAGCTTCAACTTCTAA 27604707 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| ||||||||||| ||||| ||||| Sbjct 27604708 GGTAATGGTTTTACCAGTGAGAGTTTTGACAAAGATTTG 27604746 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||||||||||| || | || ||||| || || || || | ||||| || | | || Sbjct 27602100 TCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTGTAATCTGAGAGTGT 27602159 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||||||||||| || || ||||| || || || | ||| || || || ||| |||||| Sbjct 27602160 TCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAAACGTTGTTGATCAGGAGGAATTCC 27602219 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || |||||||| ||| ||| || | || || | | ||| || || | Sbjct 27602220 TTCTTTGTCTTGAATCTTAGCCTTTACGTTCTCTATTGTATCCGAAGCTTCAACCTCAAG 27602279 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || |||||||| ||||| ||||| Sbjct 27602280 AGTGATAGTTTTTCCAGTTAGAGTTTTGACAAAGATTTG 27602318 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||||||||| | || || || ||||| || || || || | ||||| || | | || Sbjct 27601872 TCGAAGTCTTAATACCAGATGAAGAGTAGATTCTTTCTGAATATTGTAATCTGAGAGTGT 27601931 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||||||||||| | || || || || ||||| | ||| || || || ||| |||||| Sbjct 27601932 TCTTCCATCTTCTAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCAGGAGGAATTCC 27601991 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || |||||||| ||| ||| || | || || | | ||| || || | Sbjct 27601992 TTCTTTGTCTTGAATCTTAGCCTTTACGTTCTCTATTGTATCCGAAGCTTCAACTTCAAG 27602051 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || |||||||| |||||||| || Sbjct 27602052 AGTGATAGTTTTCCCAGTAAGAGTTTTGACAAAAATCTG 27602090 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||||||||||| || | ||| | || || || || || | ||||| || | || Sbjct 27601416 TCGAAGTCTCAATACCAAGTGCAATGTAGATTCTTTCTGAATATTGTAATCTAAGAGTGT 27601475 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||||||||||| || || ||||| || || || | || ||||| || ||| |||||| Sbjct 27601476 TCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATTCC 27601535 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || |||||||| ||| || ||| | ||| || | | ||| || || | Sbjct 27601536 TTCTTTATCTTGAATCTTAGCCTTTACATTTTCTATGGTATCCGAAGCTTCAACTTCAAG 27601595 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || |||||||| ||||| ||||| Sbjct 27601596 TGTAATAGTTTTTCCAGTAAGAGTTTTAACAAAGATTTG 27601634 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||| || ||||| ||| | ||||||||||| || | | |||||||| | |||||| Sbjct 27601736 ATCTTTGCTGGAAAACAGCTTGAAGATGGAAGAACACTCTCAGATTACAATATTCAGAAA 27601677 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || ||||||||||| || || ||||||||||| Sbjct 27601676 GAATCTACTCTTCATCTGGTATTGAGACTTCG 27601645 >seq6 Length=18472937 Score = 113 bits (124), Expect = 1e-19 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || ||||| || || || || || ||||| | ||||| || | | ||| Sbjct 4824958 CGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTA 4824899 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||||||| || ||||| ||||| | | ||| || || ||| ||| ||| Sbjct 4824898 CGACCATCTTCCAGCTGTTTACCGGCAAAGATCAATCTCTGTTGATCAGGAGGAATACCT 4824839 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCA-CGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| |||||||| ||| |||| | | ||| | || |||| | ||| || || || Sbjct 4824838 TCTTTATCCTGAAT-TTTAGCTTTAACATTTTCAATAGTATCTGAAGCTTCAACTTCTAA 4824780 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| ||||| ||||||||||| Sbjct 4824779 AGTAATAGTTTTTCCAGTGAGTGTTTTGACAAAAATTTG 4824741 Score = 109 bits (120), Expect = 1e-18 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || ||||| || || || || || ||||| | ||||| || | | ||| Sbjct 4825186 CGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTA 4825127 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||| || || ||||| ||||| | | ||| || || ||| ||| ||| Sbjct 4825126 CGACCATCTTCCAGTTGTTTACCGGCAAAGATTAATCTCTGTTGATCAGGAGGAATACCT 4825067 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCA-CGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| |||||||| ||| |||| | | ||| | || |||| | ||| || || || Sbjct 4825066 TCTTTATCCTGAAT-TTTGGCTTTAACATTTTCAATAGTATCTGAAGCTTCAACTTCTAA 4825008 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| ||||| ||||||||||| Sbjct 4825007 AGTAATAGTTTTTCCAGTGAGTGTTTTGACAAAAATTTG 4824969 Score = 105 bits (116), Expect = 2e-17 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| |||||||| || ||||| | || || || | | || | |||||| Sbjct 4826773 AGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAATCGGAAAGTGTACGACCATCT 4826714 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || || || || || | | ||| || || ||| ||| |||||| || Sbjct 4826713 TCCAGCTGTTTACCAGCAAAAATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTCT 4826654 Query 199538 TGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||| |||||||| || ||| | ||||| | | ||| || || | || || || Sbjct 4826653 TGAAT-TTTTGCTTTTACATTTTCAATTGTGTCAGAAGCTTCAACTTCAAGAGTAATAGT 4826595 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||||||||| || ||||||||||| Sbjct 4826594 TTTACCCGTGAGAGTCTTGACAAAAATTTG 4826565 Score = 100 bits (110), Expect = 7e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || || || || || ||||| || ||||| | || || || | | ||| Sbjct 4825642 CGAAGTCGTAGAACGAGATGAAGGGTCGATTCTTTTTGAATATTATAATCGGAAAGAGTA 4825583 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||| || || ||||| ||||| | | ||| || || ||| ||| ||| Sbjct 4825582 CGACCATCTTCCAGTTGTTTACCGGCAAAGATCAATCTCTGTTGATCTGGAGGAATACCT 4825523 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| |||||||| ||| || || || ||| | ||| |||| | ||| || || | Sbjct 4825522 TCTTTATCCTGAAT-TTTGGCTTTAACATTTTCAATGGTATCTGAAGCTTCAACTTCGAG 4825464 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || ||||| || |||||||| Sbjct 4825463 AGTAATAGTCTTTCCTGTAAGGGTTTTGACGAAAATTTG 4825425 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||| || ||||| || || |||||||| | ||| | |||||||||| | || ||| Sbjct 4825323 ATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACTCTTTCCGATTACAATATTCAAAAA 4825382 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 |||||||| ||||| ||||||||| ||||||| Sbjct 4825383 GAGTCTACACTTCATCTTGTTTTGCGACTTCG 4825414 >seq4 Length=12718334 Score = 113 bits (124), Expect = 1e-19 Identities = 138/186 (74%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 199442 TTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATG 199501 ||||| | || ||||| | ||||| | |||||||||| |||||||| || || || Sbjct 12038485 TTTTGAATATTATAGTCCGATAAAGTACGACCATCTTCCAATTGCTTTCCAGCAAAAATA 12038544 Query 199502 AGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTT-CACGGATTC 199560 ||||| ||||| || || ||||||||| |||||||| ||| |||| ||| ||| Sbjct 12038545 AGACGTTGCTGATCAGGTGGTATTCCTTCTTTATCCTGAAT-TTTAGCTTTCACATTTTC 12038603 Query 199561 GACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAA 199620 | || |||| || |||||| || | ||||| || |||||||| | |||||||||||| Sbjct 12038604 TATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACAAA 12038663 Query 199621 AATTTG 199626 || || Sbjct 12038664 TATCTG 12038669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178841226651507