Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 2e-12 seq6 86.0 7e-12 >seq1 Length=29893408 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | | |||||| | ||| | |||| |||||||||||||| || || || Sbjct 27604751 CCTCCTCTAAGTCTCAACACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAG 27604810 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | | || || || || || || || || |||||||| ||||| || | || Sbjct 27604811 AGAGTTCTTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAGCGTTGCTGATCAGGGGGA 27604870 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || ||||| ||||| ||| | | | | ||||| | ||| || Sbjct 27604871 ATTCCTTCTTTGTCTTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCTTCAACT 27604930 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | ||||| ||||| || || || ||||| ||||| ||||||||| Sbjct 27604931 TCAAGTGTGATAGTTTTTCCAGTAAGAGTTTTGACAAAAATTTGCATT 27604978 >seq6 Length=18472937 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| |||||||| || | ||| ||||| || ||||| ||||| || || || Sbjct 4826104 CCACCTCTCAAACGCAATACTAAATGTAATGTTGATTCTTTTTGAATATTATAATCCGAA 4826045 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || ||||| || || || || ||||| | |||||| || | || Sbjct 4826044 AGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGAGGA 4825985 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||| || || || | || | | | | || ||| | ||| || Sbjct 4825984 ATACCCTCCTTATCTTGAATTTTAGTTTTAACATTTTCGATAGTATCGGATGCTTCAACC 4825925 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||||||||| || || || || ||||| || |||||||| Sbjct 4825924 TCCAAAGTGATGGTTTTTCCGGTAAGAGTCTTAACGAAAATTTGCAT 4825878 Score = 82.4 bits (90), Expect = 9e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||| |||||||| || | ||| | ||| || ||||| |||||||| || || Sbjct 4826332 CCTCCTCGCAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTGTAATCCGAA 4826273 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || || || || || || || ||||| | |||||| || | || Sbjct 4826272 AGTGTACGACCATCTTCCAGTTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGAGGG 4826213 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||| || || || | || | | | | || ||| | ||| || Sbjct 4826212 ATACCCTCCTTATCTTGAATTTTAGTTTTAACATTTTCAATAGTATCGGATGCTTCAACC 4826153 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| ||||||||||| || || || ||||| || || ||||||||| Sbjct 4826152 TCCAAAGTGATGGTTTTTCCGGTAAGAGTTTTGACGAAAATTTGCATT 4826105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565200804580920