Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq6 109 4e-19 seq4 100 2e-16 seq1 98.7 7e-16 >seq6 Length=18472937 Score = 109 bits (120), Expect = 4e-19 Identities = 169/238 (71%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 39485 AATCATCG-CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTA 39543 |||||||| || ||||| | ||| ||||| | || | ||| ||||||||| |||||| Sbjct 4826797 AATCATCGACCACCTCGGAGACGAAGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTA 4826738 Query 39544 TAATCGGCCAAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCT 39601 ||||||| ||| | || |||| |||| ||||| || ||||||| || | ||| | Sbjct 4826737 TAATCGG--AAAGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTCTGTT 4826680 Query 39602 GATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG 39661 |||| | || | ||||||||||| |||||| ||| | | | | |||||| | Sbjct 4826679 GATCAGGAGGAATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTTTCAATTGTGTCAG 4826620 Query 39662 CGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| || || | |||||| ||||||||||| | ||| || || || || ||||| Sbjct 4826619 AAGCTTCAACTTCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGACAAAAATTTGCAT 4826562 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||||| ||||| ||||| | || |||||||| ||||||||||| | Sbjct 4824736 CCACCTCTTAAACGTAGTACTAAATGTAGTGTTGACTCTTTTTGAATATTATAATCAGAT 4824677 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| || |||||||| || |||| || || | |||||||| | || Sbjct 4824676 AATGTACGCCCATCTTCTAATTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGGA 4824617 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| ||||| ||||| ||| | | | | || |||| | || || Sbjct 4824616 ATTCCTTCCTTGTCTTGAATTTTCGCTTTTACATTTTCAATGGTATCTGAGGCCTCAACC 4824557 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 |||| ||| ||||||||||| || || ||||| || |||||||||||| Sbjct 4824556 TCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCATG 4824509 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||||||||||| ||| ||||| | || ||||||||| ||||| ||||| | Sbjct 4826332 CCTCCTCGCAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTGTAATC--CG 4826275 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 ||| | || |||| |||| |||||| || ||||||| || | ||||||||| | | Sbjct 4826274 AAAGTGTACGACCATCTTCCAGTTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGAG 4826215 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | | || || || || ||||| ||||| | | | || || | ||| | Sbjct 4826214 GGATACCCTCCTTATCTTGAATTTTAGTTTTAACATTTTCAATAGTATCGGATGCTTCAA 4826155 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||||||| || ||||| || || | |||||| ||||| || ||||| Sbjct 4826154 CCTCCAAAGTGATGGTTTTTCCGGTAAGAGTTTTGACGAAAATTTGCAT 4826106 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| |||||||| ||| ||||| || || ||||||||| ||||||||||| | Sbjct 4826104 CCACCTCTCAAACGCAATACTAAATGTAATGTTGATTCTTTTTGAATATTATAATC--CG 4826047 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 ||| | || |||| |||| ||||| || ||||||| || | ||||||||| | | Sbjct 4826046 AAAGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGAG 4825987 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTC 39668 | | || || || || ||||| |||| || ||| || || || | ||| Sbjct 4825986 GAATACCCTCCTTATCTTGAATTTTAGTTTTAACATTTTCGATA--GTATCGGATGCTTC 4825929 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||||||| || ||||| || || | ||| || ||||| || ||||| Sbjct 4825928 AACCTCCAAAGTGATGGTTTTTCCGGTAAGAGTCTTAACGAAAATTTGCAT 4825878 >seq4 Length=12718334 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 39530 CTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAA 39589 ||||||| |||||||| || | ||| || |||| |||||||| || || |||||| Sbjct 12038483 CTTTTTGAATATTATAGTCCGATAAAGTACGACCATCTTCCAATTGCTTTCCAGCAAAAA 12038542 Query 39590 TTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG 39649 | | ||| |||||||| | |||| |||||||| || ||||| ||| | | Sbjct 12038543 TAAGACGTTGCTGATCAGGTGGTATTCCTTCTTTATCCTGAATTTTAGCTTTCACATTTT 12038602 Query 39650 CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGA 39709 ||| || |||| ||| || || | ||| || ||||||||||| |||||||| || | Sbjct 12038603 CTATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACAA 12038662 Query 39710 AGATCTGCAT 39719 | |||||||| Sbjct 12038663 ATATCTGCAT 12038672 >seq1 Length=29893408 Score = 98.7 bits (108), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 |||||| || || |||||||| | | | | | |||| || |||||||| || |||| Sbjct 27604558 TTCTTTCTGAATGTTATAATCTGAAAGAGTTCTTCCATCTTCTAATTGTTTACCAGCAAA 27604617 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 |||||||| || ||||| | || | ||||||||||| || || ||||| | Sbjct 27604618 GATTAAACGTTGTTGATCAGGAGGAATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATT 27604677 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | ||| ||| |||| ||| || || || ||||| |||||||| || | |||||| || Sbjct 27604678 CTCTATTGTATCTGAAGCTTCAACTTCTAAGGTAATGGTTTTACCAGTGAGAGTTTTGAC 27604737 Query 39708 GAAGATCTGCAT 39719 ||||| ||||| Sbjct 27604738 AAAGATTTGCAT 27604749 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC----ATCGTCCAATTGTTTCCCGC 39583 ||| ||||| ||||||||||| | || | |||| ||| || | |||||| || Sbjct 27605242 TTCCTTTTGGATATTATAATCTG----AAAGTGTTCTACCATCTTCAAGTTGTTTGCCAG 27605297 Query 39584 CAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA 39643 ||||||||||||| || ||||| | || | |||||||| || || || || | Sbjct 27605298 CAAAAATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTATCTTGAATCTTAGCCTTTA 27605357 Query 39644 TCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTT 39703 || ||| |||||||| ||| || || || || || ||||| || |||||||| | Sbjct 27605358 CATTCTCTATTGTGTCTGAAGCTTCAACTTCTAAGGTGATGGTTTTTCCTGTTAAAGTCT 27605417 Query 39704 TTACGAAGATCTGCAT 39719 | || ||||||||||| Sbjct 27605418 TAACAAAGATCTGCAT 27605433 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | | || ||||||||| | ||| |||||| || ||||| ||||| | Sbjct 27602095 CCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTGTAATCTGAG 27602154 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | |||| || | |||||| || ||||||||||||| || ||||| | || Sbjct 27602155 AGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAAACGTTGTTGATCAGGAGGA 27602214 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| || || || | || ||| ||| || | ||| || Sbjct 27602215 ATTCCTTCTTTGTCTTGAATCTTAGCCTTTACGTTCTCTATTGTATCCGAAGCTTCAACC 27602274 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||| || ||||| || |||| |||||| || ||||| ||||| Sbjct 27602275 TCAAGAGTGATAGTTTTTCCAGTTAGAGTTTTGACAAAGATTTGCAT 27602321 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | | || ||||| ||| | ||| |||||| || ||||||||||| | Sbjct 27604979 CCTCCTCGAAGTCTCAATACCAGATGAAGAGTAGATTCTTTCTGAATATTATAATCTGAG 27605038 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | |||| || | ||||| || |||| || || || |||||||| | || Sbjct 27605039 AGTGTTCTTCCATCTTCAAGCTGTTTGCCAGCAAAGATCAATCGTTGCTGATCAGGAGGA 27605098 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||| || || || ||||| || ||| |||||||| ||| || Sbjct 27605099 ATTCCTTCTTTATCTTGAATCTTAGCTTTAACATTCTCTATTGTGTCTGAAGCTTCAACT 27605158 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || |||||||| || || || | |||||| || ||||| ||||| Sbjct 27605159 TCTAAGGTAATTGTCTTGCCAGTGAGAGTTTTGACAAAGATTTGCAT 27605205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347347073189993