Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq6 96.9 3e-15 seq1 82.4 8e-11 >seq6 Length=18472937 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| ||||| || || || ||||||||||| | || || || || | Sbjct 4826105 AATGCAAATTTTCGTCAAAACTCTTACCGGAAAAACCATCACTTTGGAGGTTGAAGCATC 4826164 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | ||| ||||| ||||| | || || ||||| || || | || || Sbjct 4826165 CGATACTATTGAAAATGTTAAAACTAAAATTCAAGATAAGGAGGGTATCCCTCCAGATCA 4826224 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | |||| || || ||||| ||||| || | || || || || ||||| Sbjct 4826225 GCAGAGATTGATTTTTGCTGGTAAACAACTGGAAGATGGTCGTACACTTTCGGATTACAA 4826284 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||| ||| | || || ||||| || |||||||| |||| || Sbjct 4826285 TATTCAAAAAGAATCAACACTACATTTAGTATTGCGTTTGCGAGGAGG 4826332 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || ||||||||||| | || || || || || Sbjct 4825878 ATGCAAATTTTCGTTAAGACTCTTACCGGAAAAACCATCACTTTGGAGGTTGAAGCATCC 4825937 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| ||||| ||||| | || || ||||| ||||| | || || Sbjct 4825938 GATACTATCGAAAATGTTAAAACTAAAATTCAAGATAAGGAGGGTATTCCTCCAGATCAG 4825997 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | | |||| || || ||||||||||| || | || || || || || || Sbjct 4825998 CAGAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACACTTTCGGATTATAAT 4826057 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||| ||| | || | ||||| || ||||||||||||| || Sbjct 4826058 ATTCAAAAAGAATCAACATTACATTTAGTATTGCGTTTGAGAGGTGG 4826104 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || |||||||| ||||| || || | || || || || | Sbjct 4826562 ATGCAAATTTTTGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTCT 4826621 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | |||| |||||| | |||||||| || ||||| | || ||| Sbjct 4826622 GACACAATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCTCCTGATCAA 4826681 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | | |||| || || ||||||||||| || | || || || ||| || || Sbjct 4826682 CAGAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACACTTTCCGATTATAAT 4826741 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCCG 38473 || ||||| ||| |||| || || | || || ||| | |||| || || Sbjct 4826742 ATTCAAAAAGAATCGACTCTTCACCTTGTACTTCGTCTCCGAGGTGGTCG 4826791 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || ||||| ||||| || ||||| || || | || || || || | Sbjct 4824737 AATGCAAATTTTTGTCAAAACACTCACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTC 4824796 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | ||| |||||| ||||| | || ||||| || ||||| | || || Sbjct 4824797 AGATACTATTGAAAATGTTAAAGCTAAAATTCAGGATAAAGAAGGTATTCCTCCTGATCA 4824856 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| | | || | || || ||||||||||| || | || || || ||| ||||| Sbjct 4824857 ACAGAGATTGATCTTTGCCGGTAAACAGCTGGAAGATGGTCGTACTCTTTCCGATTACAA 4824916 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || ||||| ||| | || || ||| | || |||| Sbjct 4824917 TATTCAAAAAGAATCTACACTTCATCTTGTTTTGCG 4824952 >seq1 Length=29893408 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || ||||| || || || ||||| ||||| | || || || || | Sbjct 27604978 AATGCAAATTTTTGTCAAAACTCTTACTGGAAAAACTATCACACTTGAAGTTGAAGCTTC 27604919 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | ||| | || | || || | |||||||| ||||||||| | || || Sbjct 27604918 AGACACAATAGAAAATGTAAAGGCTAAGATTCAAGACAAAGAAGGAATTCCCCCTGATCA 27604859 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | || || ||||| || || || | | || ||| || || || Sbjct 27604858 GCAACGCTTGATCTTTGCTGGTAAACAACTAGAAGATGGAAGAACTCTCTCAGATTATAA 27604799 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || || ||||| ||| || | | ||||| || Sbjct 27604798 TATCCAAAAGGAATCTACACTCCATTTAGTGTTGAGACTTAGAGGAGG 27604751 Score = 82.4 bits (90), Expect = 8e-11 Identities = 159/233 (68%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||||| || || || || || | || || |||||||||||| | || || || || Sbjct 27605437 AAAAATGCAGATCTTTGTTAAGACTTTAACAGGAAAAACCATCACCTTAGAAGTTGAAGC 27605378 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | | || | || || | || ||||| |||||||| | || Sbjct 27605377 TTCAGACACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCAGA 27605318 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGAC 38417 ||||| || | |||| || |||||||| || || || | || ||| ||| || Sbjct 27605317 TCAACAACGTTTAATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTTTCA--GAT 27605260 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || |||||||||||| | || || ||||| ||| || | | ||||| || Sbjct 27605259 TATAATATCCAAAAGGAATCTACACTTCATTTAGTGTTGAGACTTAGAGGAGG 27605207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500139532256640