Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq8 113 5e-20 >seq8 Length=13546544 Score = 113 bits (124), Expect = 5e-20 Identities = 172/243 (71%), Gaps = 8/243 (3%) Strand=Plus/Plus Query 154866 TCATGTATTATGATTACATACCCATCTACACATGGTGTATTTGAA---ACTAACATTAGA 154922 || ||| | ||||| ||||| ||||| ||| |||| || |||||| |||| | | Sbjct 7889229 TCTTGTTTAATGATAACATATCCATCAACAAATGGAGTGTTTGAAGAGACTATC----GC 7889284 Query 154923 C-AGATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCT 154981 | | || |||| || ||||| | ||||||||| || ||| | |||||||| || | Sbjct 7889285 CGATATTTGTACTATGATTCATAAAGCTGGTGGTCAAGTGTATTTAGATGGAGCTAACAT 7889344 Query 154982 AAATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAA 155041 ||||| || || ||| || ||| |||| || ||| || || | ||||| || Sbjct 7889345 GAATGCTCAAGTTGGATTATGTCGTCCAGGTGATTACGGTAGTGACGTTTCACATCTTAA 7889404 Query 155042 CTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGG 155101 ||| ||||||||||| ||||| || || || |||||||| ||||| | || ||||| || Sbjct 7889405 CTTGCATAAAACATTTTGTATACCTCACGGCGGTGGAGGACCTGGAATGGGACCTATTGG 7889464 Query 155102 TGT 155104 || Sbjct 7889465 AGT 7889467 Score = 96.9 bits (106), Expect = 4e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 153894 GCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGT 153953 ||||| | ||||| || || || |||| |||||||| || ||||||||||| || || Sbjct 7888083 GCATATCGCTTAGCTCTTCAAACACGAGAACAGCATATTAGAAGAGACAAAGCTACTAGC 7888142 Query 153954 AACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCATATCAT 154013 || || || || || || ||| | ||||| |||||||||| | | ||||| | ||||||| Sbjct 7888143 AATATTTGTACCGCACAAGCATTACTGGCAAATATGTCTGCAATGTATGCTGTATATCAT 7888202 Query 154014 GGTGCAGATGGACTACATGCTATAGCAA 154041 || | || ||| || | ||| |||| Sbjct 7888203 GGACCTGAAGGAATAAAAAATATTGCAA 7888230 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 153288 TACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAA 153347 || || || |||||| | || || || || || ||| | |||| | |||| ||||||||| Sbjct 7887422 TATACACCATATCAACCAGAAATTTCACAAGGCAGACTTGAAGGTCTATTGAATTACCAA 7887481 Query 153348 ACGCTCATCACAGAACTTACAGGATTACCAATAGCAAACGCATCTCTATTAGATGAAGCA 153407 || | || || | || ||| | |||||| ||||||||||| |||||||||| Sbjct 7887482 ACAATGATATGTGACTTAACTGGAATGGAAATAGCGAACGCATCTCTTTTAGATGAAGGC 7887541 Query 153408 ACTGCAGCAGCAGAAGC 153424 |||||||||||||| || Sbjct 7887542 ACTGCAGCAGCAGAGGC 7887558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579174275108640