Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq8 111 2e-19 >seq8 Length=13546544 Score = 111 bits (122), Expect = 2e-19 Identities = 168/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 159541 TCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAG 159600 || ||| | ||||| ||||||||||| ||| |||| || |||||| | ||| | Sbjct 7889229 TCTTGTTTAATGATAACATATCCATCAACAAATGGAGTGTTTGAAGAGACTATCGCCGAT 7889288 Query 159601 ATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAAT 159660 || |||| || ||||| | ||||||||| || ||| | ||||| || || | ||| Sbjct 7889289 ATTTGTACTATGATTCATAAAGCTGGTGGTCAAGTGTATTTAGATGGAGCTAACATGAAT 7889348 Query 159661 GCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTA 159720 || || || || || ||| |||| || ||| || || | ||||| ||||| Sbjct 7889349 GCTCAAGTTGGATTATGTCGTCCAGGTGATTACGGTAGTGACGTTTCACATCTTAACTTG 7889408 Query 159721 CATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||| ||||| ||||| || || || |||||||| ||||| | || |||||||| || Sbjct 7889409 CATAAAACATTTTGTATACCTCACGGCGGTGGAGGACCTGGAATGGGACCTATTGGAGT 7889467 Score = 105 bits (116), Expect = 8e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 158569 GCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGT 158628 ||||| | ||||| || || || |||| |||||||| |||||||||||||| || || Sbjct 7888083 GCATATCGCTTAGCTCTTCAAACACGAGAACAGCATATTAGAAGAGACAAAGCTACTAGC 7888142 Query 158629 AACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCATATCAT 158688 || || || || ||||||||| | ||||| |||||||||| | ||||| | ||||||| Sbjct 7888143 AATATTTGTACCGCACAAGCATTACTGGCAAATATGTCTGCAATGTATGCTGTATATCAT 7888202 Query 158689 GGTGCAGATGGACTACATGCTATAGCAA 158716 || | || ||| || | ||| |||| Sbjct 7888203 GGACCTGAAGGAATAAAAAATATTGCAA 7888230 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 157963 TACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAA 158022 || || || |||||| | || || || || || ||| | |||| | |||| ||||||||| Sbjct 7887422 TATACACCATATCAACCAGAAATTTCACAAGGCAGACTTGAAGGTCTATTGAATTACCAA 7887481 Query 158023 ACGCTCATCACAGAACTCACAGGACTACCGATAGCAAACGCATCTCTATTAGATGAAGCA 158082 || | || || | || ||| | ||||| ||||||||||| |||||||||| Sbjct 7887482 ACAATGATATGTGACTTAACTGGAATGGAAATAGCGAACGCATCTCTTTTAGATGAAGGC 7887541 Query 158083 ACTGCAGCAGCAGAAGC 158099 |||||||||||||| || Sbjct 7887542 ACTGCAGCAGCAGAGGC 7887558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588012087244560