Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1 123 2e-23 seq6 113 3e-20 >seq1 Length=29893408 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 ||||| || ||||||| |||| |||||||||||||||||| || ||||| ||| | || Sbjct 27604535 CTCAACACTAAGTGAAGTGTGGATTCTTTCTGAATGTTATAATCTGAAAGAGTTCTTCCA 27604594 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || || | ||||| || ||||| |||| ||||| || || | || | || || ||| Sbjct 27604595 TCTTCTAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCAGGAGGAATTCCTTCTTTG 27604654 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || |||||| ||| || |||| | || || ||||| || | ||| ||| Sbjct 27604655 TCTTGAATCTTAGCTTTAACATTCTCTATTGTATCTGAAGCTTCAACTTCTAAGGTAATG 27604714 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || |||||||| || |||||||| |||||| Sbjct 27604715 GTTTTACCAGTGAGAGTTTTGACAAAGATTTGCATA 27604750 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | ||||| |||| |||| || |||||||||||| || || || | Sbjct 27601637 TTCCTCCACGAAGTCTCAATACCAGATGAAGAGTAGATTCTTTCTGAATATTGTAATCTG 27601696 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || ||| | |||| || ||||||||||| ||||| || | ||||||||| || | | Sbjct 27601697 AGAGTGTTCTTCCATCTTCAAGCTGTTTTCCAGCAAAGATCAATCGTTGCTGATCAGGAG 27601756 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || || ||||| |||||| ||| ||| | |||| | || || |||| Sbjct 27601757 GAATTCCTTCTTTGTCTTGAATCTTAGCTTTTACGTTTTCTATTGTATCTGAAGCTTCAA 27601816 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || || ||||| || || ||||| || ||||| || ||||| Sbjct 27601817 CTTCAAGAGTGATAGTTTTCCCAGTTAGAGTTTTGACAAAAATTTGCAT 27601865 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | ||||| |||| |||| || |||||||||||| ||||| || | Sbjct 27604977 TTCCTCCTCGAAGTCTCAATACCAGATGAAGAGTAGATTCTTTCTGAATATTATAATCTG 27605036 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || ||| | |||| || |||||||| || ||||| || | ||||||||| || | | Sbjct 27605037 AGAGTGTTCTTCCATCTTCAAGCTGTTTGCCAGCAAAGATCAATCGTTGCTGATCAGGAG 27605096 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || || || || |||||| ||| || |||| | || || |||| Sbjct 27605097 GAATTCCTTCTTTATCTTGAATCTTAGCTTTAACATTCTCTATTGTGTCTGAAGCTTCAA 27605156 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || | ||| || || || || |||||||| || |||||||| |||||| Sbjct 27605157 CTTCTAAGGTAATTGTCTTGCCAGTGAGAGTTTTGACAAAGATTTGCATA 27605206 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | ||||| ||||| |||| || |||||||||||| || || || | Sbjct 27602093 TTCCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTGTAATCTG 27602152 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || ||| | |||| || || |||||||| ||||| |||| ||||| || || | | Sbjct 27602153 AGAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAAACGTTGTTGATCAGGAG 27602212 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || || ||||| |||||| || ||| |||| | || || |||| Sbjct 27602213 GAATTCCTTCTTTGTCTTGAATCTTAGCCTTTACGTTCTCTATTGTATCCGAAGCTTCAA 27602272 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || || |||||||| || ||||| || |||||||| ||||| Sbjct 27602273 CCTCAAGAGTGATAGTTTTTCCAGTTAGAGTTTTGACAAAGATTTGCAT 27602321 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 |||||| | | ||||| |||||||| | ||| |||||||||||| || || || | Sbjct 27601410 TCCTCCTCGAAGTCTCAATACCAAGTGCAATGTAGATTCTTTCTGAATATTGTAATCTAA 27601469 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 || ||| | |||| || || |||||||| ||||| || | ||||||||| || | || Sbjct 27601470 GAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATCAGGAGG 27601529 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933 | || || || || |||||| || || | |||| | || || ||||| Sbjct 27601530 AATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTTTCTATGGTATCCGAAGCTTCAAC 27601589 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || || |||||||| || ||||| || |||||||| ||||| Sbjct 27601590 TTCAAGTGTAATAGTTTTTCCAGTAAGAGTTTTAACAAAGATTTGCAT 27601637 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| || | ||||| || || |||| ||| ||| || || || ||||| || ||| Sbjct 27605207 CCTCCTCTAAGTCTCAACACTAAATGAAGTGTAGATTCCTTTTGGATATTATAATCTGAA 27605266 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || ||| |||| || || ||||| || ||||| |||| ||||| || ||| | || Sbjct 27605267 AGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGATCTGGTGGA 27605326 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || || || |||||| || || |||| | || || ||||| Sbjct 27605327 ATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTGTCTGAAGCTTCAACT 27605386 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || | ||| ||||||||||| || | |||||| |||||||||||||| || Sbjct 27605387 TCTAAGGTGATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGCATTTT 27605436 Score = 95.1 bits (104), Expect = 8e-15 Identities = 166/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | || || |||| |||| || |||||||||||| || || || | Sbjct 27602549 TTCCTCCTCGAAGTCTTAATACCAGATGAAGAGTAGATTCTTTCTGAATATTGTAATCTG 27602608 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || ||| | |||| || ||||||||||| ||||| || | ||||| || || | | Sbjct 27602609 AGAGTGTTCTTCCATCTTCAAGCTGTTTTCCAGCAAAAATCAAACGTTGTTGATCAGGAG 27602668 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || || ||||| |||||| ||| ||| |||| | || || |||| Sbjct 27602669 GAATTCCTTCTTTGTCTTGAATCTTAGCTTTTACGTTCTCTATTGTATCTGAAGCTTCAA 27602728 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCGTAGACT 34992 | || | || || ||||| || || ||||| || ||||| || ||||| | ||||| | Sbjct 27602729 CTTCAAGAGTGATAGTTTTCCCAGTAAGAGTTTTAACAAAAATTTGCATGATTGTAGATT 27602788 Query 34993 TG 34994 || Sbjct 27602789 TG 27602790 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 ||||| |||| |||| || |||||||||||| || || || || || ||| | || Sbjct 27602335 CTCAATACCAGATGAAGAGTAGATTCTTTCTGAATATTGTAATCTGAGAGTGTTCTTCCA 27602394 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || || | ||||| || ||||| |||| ||||| || || | || | || || ||| Sbjct 27602395 TCTTCTAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCAGGAGGAATTCCTTCTTTG 27602454 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || |||||| || ||| | |||| | || || ||||| || | || || Sbjct 27602455 TCTTGAATCTTAGCCTTTACGTTTTCTATTGTATCTGAAGCTTCAACTTCAAGAGTGATA 27602514 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || || ||||| || ||||| || ||||| Sbjct 27602515 GTTTTCCCAGTTAGAGTTTTGACAAAAATTTGCAT 27602549 >seq6 Length=18472937 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| || ||||| | ||| || || || | ||| |||||| ||||| ||||| |||| Sbjct 4826106 TTCCACCTCTCAAACGCAATACTAAATGTAATGTTGATTCTTTTTGAATATTATAATCCG 4826047 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| | || |||| ||||||||||| || ||||| || | || ||||| ||| | | Sbjct 4826046 AAAGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGAG 4825987 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | |||||||| || ||| || ||| || | | || | || || |||| Sbjct 4825986 GAATACCCTCCTTATCTTGAATTTTAGTTTTAACATTTTCGATAGTATCGGATGCTTCAA 4825927 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || | || ||||||||||| || |||||||| || || || |||||| Sbjct 4825926 CCTCCAAAGTGATGGTTTTTCCGGTAAGAGTCTTAACGAAAATTTGCATA 4825877 Score = 98.7 bits (108), Expect = 6e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | ||| | ||| || || || | ||| |||||| ||||| || || |||| Sbjct 4826334 TTCCTCCTCGCAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTGTAATCCG 4826275 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| | || |||| ||||| ||||| || ||||| || | || ||||| ||| | | Sbjct 4826274 AAAGTGTACGACCATCTTCCAGTTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGAG 4826215 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | |||||||| || ||| || ||| || | | || | || || |||| Sbjct 4826214 GGATACCCTCCTTATCTTGAATTTTAGTTTTAACATTTTCAATAGTATCGGATGCTTCAA 4826155 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || ||||||||||| || ||||| || || || || ||||| Sbjct 4826154 CCTCCAAAGTGATGGTTTTTCCGGTAAGAGTTTTGACGAAAATTTGCAT 4826106 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||| ||||| ||||| || ||||| | || |||| ||||||||||| || ||||| Sbjct 4826753 TTCTTTTTGAATATTATAATCGGAAAGTGTACGACCATCTTCCAGCTGTTTACCAGCAAA 4826694 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || || || || | || | || || ||||| ||| || ||| || Sbjct 4826693 AATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTCTTGAATTTTTGCTTTTACATT 4826634 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | ||| || ||||| || | || || ||||| |||||||||||||| || Sbjct 4826633 TTCAATTGTGTCAGAAGCTTCAACTTCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGAC 4826574 Query 34970 AAAGATCTGCATA 34982 ||| || |||||| Sbjct 4826573 AAAAATTTGCATA 4826561 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||||| ||||| ||||| || || | | || |||| || | ||||| || ||||| Sbjct 4824700 TCTTTTTGAATATTATAATCAGATAATGTACGCCCATCTTCTAATTGTTTACCAGCAAAG 4824641 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || |||||| ||| | || | || |||||||| ||| ||| ||| || | Sbjct 4824640 ATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGAATTTTCGCTTTTACATTT 4824581 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || ||||||||| || | ||||| ||||| || || | || || ||| Sbjct 4824580 TCAATGGTATCTGAGGCCTCAACCTCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACA 4824521 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 4824520 AAGATCTGCAT 4824510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324612547612488